NONHSAT037654
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT037654 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
4062 nt |
Genomic location |
chr14-:73075742..73079803 |
Exon number |
1 |
Exons |
73075742..73079803 |
Genome context |
|
Sequence |
000001 TATGAATATT GATGATGAGA ACAGGAATGC CCATGTGCAT GCGCGTGCGT GCACGCACGC ACATACACAC ACACACACAC 000080
000081 ACACACACAC ACACACACAC ACGCCCTACT TAATGAACCA AAGGGAAACT TTGATGTTGC TCCAGGACAA GAGGGAGAGC 000160 000161 CAGGGGCTGC CAGGCAAGGT GCATCTTTCC TGAAGTCTTC TCCAGTCCTG CTCCTCCAGC TCTCAGCCTC TGCACAGCCA 000240 000241 CCAGGGTTGC AAAGGGAGCC TTGTGCTTGG AAAGCTACTG GCTCCGCGAC CTCTCTCCTT CTCTTCCCTT CGTTCACCTA 000320 000321 TGCTTCTTTT CATGAAAGAT ATTTGGCAAT AGTTGGGTAC TTCAAAAGTC TCAATTCTGC TATCAAAGGG ATGCAAAGCT 000400 000401 TTTATGGCTA GAATGGGGTT TGTGGTTTAT ACGGACTTGG TTTGCCCTTC CATGTCTACT CCCCACTGAG ACCCTGATTC 000480 000481 TCCTCCTGCC CTCTCCCTTC CCTGCACTGT TTCCTCCCTT CCCTCTGCCG TGATAGATGC TAAGGAGTGG GGTGGAGGTG 000560 000561 GGAAGTGGGA AGCAACAGTG GCGTATAGGA AAAAGAAAAT ATACCCCGTG CACATTTTCA ACATGTAGTT GAAGAAGCCT 000640 000641 AAATTAGGTA CTAGAAAAAA AAAAAGGACA GAAACACTGC CTGATATGTG AGCAAGAGCA TGAAAATATA GAATGATTAT 000720 000721 CTCAGAGCAG AGGAGGTGGG GAGCAGGTGG CTGGAGAGAG GCGGGGTAGG TAGGCAGGGC GTCCCTGGCT CACCAATGCG 000800 000801 TCTGGTCCAC ATGGCATTTG GGAAAGCAGA TGGGTCATGC TTTTGCAATG AATGGTCAGA TGCTTAGGGG GCATTTGTGC 000880 000881 TCCTCTGGCC AGGAAAGGGA ACAGAGTCCA TCCAAGCTGC CCCCCACTCA TCTGCCATGG TTGTCCACCC TGGGGGTTTT 000960 000961 TCCTCTGAAG GAAAATGAAC CCATCTTTTG CCTGCCATGA ATCATTGCAG GGCAGGCTGT TACTGGCTAA ATTAAAACCC 001040 001041 TTGGCAGGGC ATCGACTGTG TGCGAGGCAA TGCTCTAGGT CCTGTAGGGG CTGGAAAATA AACCGCATGC TGGCCTAGCC 001120 001121 TTCAAGTTGC TTTTCAGCCA TGAAATTAAG CTCTGCCAAG CAATCGTGAT TGTAGGTCAA GTATCGCGCC ATCACGGAAG 001200 001201 GTGTAAGTAT ATGTAGGTTT CTCTGTTGAG GATGCGTGTT CCTCAGTAGA AGACAAGCAG GTGGAGGCAT CCAGTGATTT 001280 001281 CTACCCTGTG GAGGCTGAGG GGTCGGGGGA AGAAAACAGA TGACCTCAGC CTAGTTGCTT TAATCTGCTT TTCCAAGCAC 001360 001361 TGGATGCCCT TGGATGACAG CATCCTCAGC ATTAAAACTG GTGAACTGAT GAAGTCACCT GGCCTGGAGT GTGTTGGGCA 001440 001441 GCCAGTGTCC CCAGAGCTGC TTGTGGGTTT CTGGGGTGGA AGGCAGGGAG GTGCAACTGG CAGGGCCTGA TCAGAGGCAG 001520 001521 AAAATGACCC CCACAGTGGT CTTTTCCCTG CTAGAGAAAG CAGAGAGCGG GACTGGGGGG GTGGGGGCTT CAAGTACAGA 001600 001601 TTGGGCACAC TCCACCAGAC CCCAGCAAGG TCAGCTGCCC CACGCCTGTA TCTGGCACTG CTGGTGTGTG CAGGGATGAA 001680 001681 ACCCAGCATC AGAGAGGTTT TCAGCAAACC TTCCATGCTC ACCTTTGGCC AGGTGCTTGT CAGATCCTAG CTTCGTGCTG 001760 001761 GCTTAGACTC TCAGTTGTTT GTGTTGACAG CATTAGGAAT AAACCGTTTG TTTCATCTTT CCTTTTCTCC ACACGTGTCA 001840 001841 CAGCCAGATT TCAGCTTTGA GTTATTCCCT GAAGAAGCCA CACCAACCTT GCTTTCAAGC AAAATGCCTG GGCTTGGGGG 001920 001921 AAGGTGTGTA TCTGTCCATG TGTGGATGTT GGCTCAGAGC TATAGCTTCT CTGTGGGGGG TGGCCCAAGG GAAGGCTCCT 002000 002001 CTGGGGCCCT GGATGGCACA TGACTCCCAG TGAGGAGAAT TCTGGTGATC TCTGTGGAGG TAGTCAGGGA CACAAGGCTT 002080 002081 GGCTGTGAGT CTGGTTTTAA AGTGCGTGAC AGCCTGAAAA GCATGCAGGG GTTTGGTCCA CTCACCTACT TGAAAGCCTG 002160 002161 TGGGCAACGT TCTTTTGAGC CAAGACTTCT CTGAATGGCC CTGCTGGTGG AAGGGGTGAG GCAAAGGCCT CTGACTTGGA 002240 002241 CCCTTTCCAC ACCAGACTGG CAGCACTTCC CCCAGGCAGC CAGTGGTGGG CCCTGAGCCC TCAGGTCCCC AGCTCCTTGA 002320 002321 GGGATGAACC TGGGAGCCCA AGAGCCAGTG GCTGAGCTCT GAGAAGGCTC CATCTCCCAC CTGCCCTTGA GCGCGCTCTC 002400 002401 AGGCTGAGAA CACGGTCTCA TCAGGCGCCT TCCTGGCCTG ATGCTGTGCT GTCTACGTCA CACGGTCGAT TCACAAAAGC 002480 002481 CAGAACTAGA CCTCAACCAG GTCATCTCCC CGTTGCCAAG TGGGTTCAGG GTGAGGGCAA TTTGTAAGCT CAATTTCTCT 002560 002561 GACAGCCAAG ACATGGAGCA TCTCTGCTAA GAAGCCAAAA GAAATTGGTT TTCTTCTTCT CATTGCTGAA GCCCCTCTGT 002640 002641 GTCTCTTCTC AGGGACAGGC TGGTCCAGTG GCTTTGGTGA GGGCGCCTCC ATTTGTGAAC GCTGGGATTC CTCTGGGTGG 002720 002721 GCTTTGGCAG GTGGCTCCTA TGGTAGGAAG GATGACCAGG TCCCTGGGAA TGAGCTGCCT ACCTGCTGCT CCACGAGGAA 002800 002801 GCTCAGGCCT GCACAGGCTC CACCAGGCCT TGGATGCCCT CTAGTTGAGT CAGAGACCCT GGAAACACAC TGAGATCTCC 002880 002881 AATTGCTGCC TCCATTGATG TCTCTAGACC TGCAGATACG AAGCAAACCT GGGATTGCTT CTTCCAGGTA TGGGCACCAG 002960 002961 AGAGGGAAGC CACTGCAACA TTTTATCCCC ATCATTCCAA AATGCTTGCT TGTCTCTTTT ACCTCACACT CACAACTCCT 003040 003041 TCTGAGACTC TCAGTCATAA AGGAATGACC AAGAGAGTGG GTCTCCAGTG AGAGAAATGC CTATGAAAGA GGGTTTCCCT 003120 003121 TTTTGCTCTT TTGAACACCC TCCCCACTGA TCCTTGGGAC CCAACGCCGC ATTGCCTCTT GCAGATGAGG TTTTGCCTTG 003200 003201 GGCTGCTTTG GTACTTCAGA CCAGGACTGA GTCTGACACA GCTTTCATGA GGTTACAGAA AAGGGCTACA GATTTGGGAA 003280 003281 GCTGTGTGTA ATGGTCTTGA GACAATATCT CCATTTGGCC CACCCTGGCT TCTCTAAAAA GCAACGACAG CAACAGACAA 003360 003361 ACAAAAAGCT CCCACCTCCC ACCCCGTTAG CTGTCCTCCT CCTTCACTGT GATGTGGTTG CGGTCTCTGT AGGTGTGTGT 003440 003441 GCCACCCTTG TCCTCTGTCC TCTGGGGATG TGCCCTTCCC ACGTGTGTCA GGTTCCCACT CTTTCGTGGT TCCTAACGTG 003520 003521 AAGTGCTGTG ATGTTTCTGC CCTGCCTAAG GAACGTATCA AGCTCTCTCA GTGTTTCAGT GTTGGAGATT GAGGCTGTGC 003600 003601 CACATCTTCT GCCATCCTAA GGGGACATGA TGGTTCTGTG ATTCCCAGAG AGCTGGCAGA TTGTGACAAT CTCCAGGAGA 003680 003681 ACCTACAGAT TGGAAGCAGC CCACACCTGA TGTGGACTCC TGACCCGGGA CTCACTCTTC ATTCAGAAGA CTGGTGGCCC 003760 003761 ACGTGCCAGG ACCACCCCAC CTCTCTTGCT GCCTTTTCTC CTGTCCTGAT GGGGTTCTGG GAGGGAGACC TGTCGCTGAT 003840 003841 GAGATGAAGA ATGTGGGGAT CGAGCAGCCT TCTTCTTTGG GACCCCTCGA TATCCCATGG AATGCTCGCA CGTTCTCAAA 003920 003921 GACTGAGTCA CAAGCCCCTA CCCCTTCCTT GCTGTGGTTA GTATCTTGTT CTGTGATTGG TTAGCAATGT TGACTACCCA 004000 004001 CGTAGTGAAT CTTTTGTCTG CAATTTAGAG AATGTGTAAA CAAATAAAAG GCTTTAAAAC TC |
Predicted Small Protein
Name | NONHSAT037654_smProtein_3290:3520 |
Length | 77 |
Molecular weight | 8360.0101 |
Aromaticity | 0.0526315789474 |
Instability index | 40.3552631579 |
Isoelectric point | 9.26177978516 |
Runs | 16 |
Runs residual | 0.0691167574108 |
Runs probability | 0.0436429076134 |
Amino acid sequence | MVLRQYLHLAHPGFSKKQRQQQTNKKLPPPTPLAVLLLHCDVVAVSVGVCATLVLCPLGM CPSHVCQVPTLSWFLT |
Secondary structure | LHHHHHHHHLLLLLLHHHHHHHHLLLLLLLLHHHEEEELLLEEEEEELEEEEEEELLLLL LLLLEEELLLLEEEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLL LLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTooooo oooooooooooooooo |