NONHSAT039216

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT039216

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1870 nt

Genomic location

chr14+:90849671..90851540

Exon number

1

Exons

90849671..90851540

Genome context

Sequence
000001 CCAACCACTG CAGGGTCGCG CCGGCCTATC AGAGCGTCCT TGTCAAACTG AACGAGGAAA GAAGCCTCAG CAGCGCCAAC 000080
000081 TAAGCAACCG GCTACAGACC GCGTTCCGGT GCGTGTGTGA CGACACCGCC GTGTGCTCCT CCGCTGGGAG ATATAGTGCC 000160
000161 CTCGCCCTTG CCTCGCCCCG CCCGCGAGCG CTCCAAAGGC TTGGGCGTGC GGCTTGCTCT TCCTCTCCGC TTGACGGGCG 000240
000241 GTGGTTCCCC CGAGACAGAA ACTTGACTGA AAAATAATAC CAAATACCCG TGCTGCGGCC CGTGGCCCTC CATAGGGCCA 000320
000321 CCTGAACTAG CCTCGCCTGT CCCCTTGCTC TTTGCCGTTC GTCCTTCGCG TTTTGTGAAA ACAGTTGGCG CCGCAGAAAT 000400
000401 GAGATAAACG CCCCTGAGCT CGAAACCCGC ACTCGAACTG CCACCGAGCC GACCCTTCCT GTTTTGGAAC TCAGGGCCCG 000480
000481 GCCACCCGAG AAGCACCCTC ATGGGCACTT TGTTTCTACA AGGGCCCGTT TCCATTTCCT TCCTAAGGTT TCCTTATCCC 000560
000561 CTGCGGCAGG AGGGGCCCGC TGGGCTCGGG TTTTCAGCTG CGTTGGAGCT GCAGAGGCTG CGGAGTGAAC GCGGCCAGGA 000640
000641 GCCCGCCTGG GAGCGCGCAG CGCTCTAGGA GCCGAGAGCC GCTGCTTGGC CCTCGCTGGC CGGGTAAACC GAGGGGAAGC 000720
000721 TCCTGGCCTC CTTTCCCTTA AGCCCCTTAT TGCTTCTGTG GGGAAGGCCC TCCTAGGTAG AGGCGAAGGA CCGGGGAGAT 000800
000801 AACCTCTCCC ATGGGCCACA TCCGCTGCCA TGGTCTGTGT CGTGCCAGAA GGTACCTCTC AGCCCTCAGT GCCGtgaaaa 000880
000881 atctgacact caagaaggtc gattgacacg cctaacgtcg cacagcaatt tagtagcaca gcacagaata gaagctaccc 000960
000961 aggctggctg tctcccaagc ctgtgtttct ctaccacaca cagtaacact gcgtcTTCCA GAGCTGAAGC TGTAGTCGTG 001040
001041 AGATGGCTCA AGCATTTGGG GGAACTGGAA GGCAGACCTG GGAATGAAGA GAATTGTTTT CTTTGAGCAG AATTTTCAGT 001120
001121 CAGTGGCCTA CAGAAAAAGT AGAGAAGAAA CATTACTTGG TTATTGTCAC TGTTCCAAGA GGCTAGCTAA GAAAATTAAA 001200
001201 TCGTGTGGAT TTCTTAAAAC TGCTGTTTCG TGTAACCTCC AAACATCTAT CTGTGACTTT GGCACAAGGT GGCTTGGATG 001280
001281 TCTGATCTTT GTGATTGAAC TATATTCACA TCCTGTTTCT AAGATTGTGT TACTAATGGT TTTTCCTGAG GTTTTACAAC 001360
001361 CAGTAGTGGT GTCTGCGCTG TAGTCAAGTG AAGGTTCTTT GATCTAAGGC TATACTTGTC AGTTGCTGTT TATTGCTTCT 001440
001441 TAAACTTTTA CTCAAAGTCT TCTTCAAAAA GGAGAAAAGC TGTGGTTTTC TTTCTGTAGG CGGTTAGTAG TCATTCCCAA 001520
001521 AGATGTTTGC CAAGTGAGCA AATATATTGG AACTTCCAAA TGAGCATTTC ACTGTAAAAA TACCTGCCCC AAAAACAATA 001600
001601 CGACATGTTT CTTTTGCAAT TTATATGGTA TAGGAAACAT GTTCTGTGAC TTCTTTGTAG CAAGCCAGAT CCTGATGTGA 001680
001681 AAAAAGAGAT CTAACTGTGC CAATAACAAA TTGAGAATTC TTGAGTAAGT TCCTTTCCTG TGTTCTTGGG ACCTCAGTTt 001760
001761 tctttttgtt tgtttgtttg agacggagat tcgctctgtc gccaggctgg agtgcagtgg cgcgatctcg gctcactcca 001840
001841 cctccacctc ccaggttcaa gcgattctcc
[back to top]

Predicted Small Protein

Name NONHSAT039216_smProtein_500:667
Length 56
Molecular weight 6116.9619
Aromaticity 0.109090909091
Instability index 70.84
Isoelectric point 8.48992919922
Runs 9
Runs residual 0.0121212121212
Runs probability 0.0458105163988
Amino acid sequence MGTLFLQGPVSISFLRFPYPLRQEGPAGLGFSAALELQRLRSERGQEPAWERAAL
Secondary structure LLEEEELLLEEEEEELLLLLLLLLLLLLLLHHHHHHHHHHHHHLLLLLHHHHHLL
PRMN -
PiMo -