NONHSAT039304
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT039304 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
6339 nt |
Genomic location |
chr14-:92524896..92572965 |
Exon number |
5 |
Exons |
92524896..92530758,92537279..92537397,92547309..92547405,92548644..92548810,92572873..92572965 |
Genome context |
|
Sequence |
000001 gagaggggca gggggcggag ctggaggggg tggttcggcg tggggGCCGT TGGCTCCAGA CAAATAAACA TGGAGTCCAT 000080
000081 CTTCCACGAG AAAAGTCCAT AAAACAGACC TGGAACGAGT GTTAGAAGCA AATGATGGCT CAGGAATGTT AGACGAAGAT 000160 000161 GAGGAGGATT TGCAGAGGGC TCTGGCACTA AGTCGCCAAG AAATTGACAT GGAAGATGAG GAAGCAGATC TCCGCAGGGC 000240 000241 TATTCAGCTA AGTATGCAAG GTAGTTCCAG AAACATATCT CAAGATATGA CACAGACATC AGGTACAAAT CTTACTTCAG 000320 000321 AAGAGCTTCG GAAGAGACGA GAAGCCTACT TTGAAAAAca gcagcaaaag cagcaacagc agcagcagca gcagcagcag 000400 000401 GGGGACCTAT CAGGACAGAG TTCACATCCA TGTGAAAGGC CAGCCACCAG TTCAGGAGCA CTTGGGAGTG ATCTAGGTGA 000480 000481 TGCTATGAGT GAAGAAGACA TGCTTCAGGC AGCTGTGACC ATGTCTTTAG AAACTGTCAG AAATGATTTG AAAACAGAAG 000560 000561 GAAAAAAATA ATACCTTTAA AAAATAATTT AGATATTCAT ACTTTCCAAC ATTATCCTGT GTGATTACAG CATAGGGTCC 000640 000641 ACTTTGGTAA TGTGTCAAAG AGATGAGGAA ATAAGACTTT TAGCGGTTTG CAAACAAAAT GATGGGAAAG TGGAACAATG 000720 000721 CGTCGGTTGT AGGACTAAAT AATGATCTTC CAAATATTAG CCAAAGAGGC ATTCAGCAAT TAAAGACATT TAAAATAGTT 000800 000801 TTCTAAATGT TTCTTTTTCT TTTTTGAGTG TGCAATATGT AACATGTCTA AAGTTAGGGC ATTTTTCTTG GATCTTTTTG 000880 000881 CAGACTAGCT AATTAGCTCT CGCCTCAGGC TTTTTCCATA TAGTTTGTTT TCTTTTTCTG TCTTGTAGGT AAGTTGGCTC 000960 000961 ACATCATGTA ATAGTGGCTT TCATTTCTTA TTAACCAAAT TAACCTTTCA GGAAAGTATC TCTACTTTCC TGATGTTGAT 001040 001041 AATAGTAATG GTTCTAGAAG GATGAACAGT TCTCCCTTCA ACTGTATACC GTGTGCTCCA GTGTTTTCTT GTGTTGTTTT 001120 001121 CTCTGATCAC AACTTTTCTG CTACCTGGTT TTCATTATTT TCCCACAATT CTTTTGAAAG ATGGTAATCT TTTCTGAGGT 001200 001201 TTAGCGTTTT AAGCCCTACG ATGGGATCAT TATTTCATGA CTGGTGCGTT CCTAAACTCT GAAATCAGCC TTGCACAAGT 001280 001281 ACTTGAGAAT AAATGAGCAT TTTTTAAAAT GTGTGAGCAT GTGCTTTCCC AGATGCTTTA TGAATGTCTT TTCACTTATA 001360 001361 TCAAAACCTT ACAGCTTTGT TGCAACCCCT TCTTCCTGCG CCTTATTTTT TCCTTTCTTC TCCAATTGAG AAAACTAGGA 001440 001441 GAAGCATAGT ATGCAGGCAA GTCTCCTTCT GTTAGAAGAC TAAACATACG TACCCACCAT GAATGTATGA TACATGAAAT 001520 001521 TTGGCCTTCA ATTTTAATAG CAGTTTTATT TTATTTTTTC TCCTATGACT GGAGCTTTGT GTTCTCTTTA CAGTTGAGTC 001600 001601 ATGGAATGTA GGTGTCTGCT TCACATCTTT TAGTAGGTAT AGCTTGTCAA AGATGGTGAT CTGGAACATG AAAATAATTT 001680 001681 ACTAATGAAA ATATGTTTAA ATTTATACTG TGATTTGACA CTTGCATCAT GTTTAGATAG CTTAAGAACA ATGGAAGTCA 001760 001761 CAGTACTTAG TGGATCTATA AATAAGAAAG TCCATAGTTT TGATAAATAT TCTCTTTAAT TGAGATGTAC AGAGAGTTTC 001840 001841 TTGCTGGGTC AATAGGATAG TATCATTTTG GTGAAAACCA TGTCTCTGAA ATTGATGTTT TAGTTTCAGT GTTCCCTATC 001920 001921 CCTCATTCTC CATCTCCTTT TGAAGCTCTT TTGAATGTTG AATTGTTCAT AAGCTAAAAT CCAAGAAATT TCAGCTGACA 002000 002001 ACTTCGAAAA TTATAATATG GTATATTGCC CTCCTGGTGT GTGGCTGCAC ACATTTTATC AGGGAAAGTT TTTTGATCTA 002080 002081 GGATTTATTG CTAACTAACT GAAAAGAGAA GAAAAAATAT CTTTTATTTA TGATTATAAA ATAGCTTTTT CTTCGATATA 002160 002161 ACAGATTTTT TAAGTCATTA TTTTGTGCCA ATCAGTTTTC TGAAGTTTCC CTTACACAAA AGGATAGCTT TATTTTAAAA 002240 002241 TCTAAAGTTT CTTTTAATAG TTAAAAATGT TTCAGAAGAA TTATAAAACT TTAAAACTGC AAGGGATGTT GGAGTTTAGT 002320 002321 ACTACTCCCT CAAGATTTAA AAAGCTAAAT ATTTTAAGAC TGAACATTTA TGTTAATTAT TACCAGTGTG TTTGTCATAT 002400 002401 TTTCCATGGA TATTTGTTCA TTACCTTTTT CCATTGAAAA GTTACATTAA ACTTTTCATA CACTTGAATT GATGAGCTAC 002480 002481 CTAATATAAA AATGAGAAAA CCAATATGCA TTTTAAAGTT TTAACTTTAG AGTTTATAAA GTTCATATAT ACCCTAGTTA 002560 002561 AAGCACTTAA GAAAATATGG CATGTTTGAC TTTTAGTTCC TAGAGAGttt ttgtttttgt ttttgttttt ttttgagacg 002640 002641 gagtcttgct atgtctccca ggctggaggg cagtggcatg atctcggctc actacaactt ccacctcccg ggttcaagca 002720 002721 attctcctgc ctcagcctcc agagtagctg ggattacagg cgcccaccac cacacccggc agatttttgt atttttggta 002800 002801 gagacgcggt ttcatcatgt ttggccaggc tggtctcgaa ctcctgacct caggtgatcc gcctgccttg gcctcccaaa 002880 002881 gtgttgggat tacaggcatg agccactgcg cctggccAGC TAGAGAGTTT TTAAAGCAGA GCTGAGCACA CACTGGATGC 002960 002961 GTTTGAATGT GTTTGTGTAG TTTGTTGTGA AATTGTTACA TTTAGCAGGC AGATCCAGAA GCACTAGTGA ACTGTCATCT 003040 003041 TGGTGGGGTT GGCTTAAATT TAATTGACTG TTTAGATTCC ATTTCTTAAT TGATTGGCCA GTATGAAAAG ATGCCAGTGC 003120 003121 AAGTAACCAT AGTATCAAAA AAGTTAAAAA TTATTCAAAG CTATAGTTTA TACATCAGGT ACTGCCATTT ACTGTAAACC 003200 003201 ACCTGCAAGA AAGTCAGGAA CAACTAAATT CACAAGAACT GTCCTGCTAA GAAGTGTATT AAAGATTTCC ATTTTGTTTT 003280 003281 ACTAATTGGG AACATCTTAA TGTTTAATAT TTAAACTATT GGTATCATTT TTCTAATGTA TAATTTGTAT TACTGGGATC 003360 003361 AAGTATGTAC AGTGGTGATG CTAGTAGAAG TTTAAGCCTT GGAAATACCA CTTTCATATT TTCAGATGTC ATGGATTTAA 003440 003441 TGAGTAATTT ATGTTTTTAA AATTCAGAAT AGTTAATCTC TGATCTAAAA CCATCAATCT ATGTTTTTTA CGGTAATCAT 003520 003521 GTAAATATTT CAGTAATATA AACTGTTTGA AAAGGCTGCT GCAGGTAAAC TCTATACTAG GATCTTGGCC AAATAATTTA 003600 003601 CAATTCACAG AATATTTTAT TTAAGGTGGT GCTTTTTTTT TTTGTCCTTA AAACTTGATT TTTCTTAACT TTATTCATGA 003680 003681 TGCCAAAGTA AATGAGGAAA AAAACTCAAA ACCAGTTGAG TATCATTGCA GACAAAACTA CCAGTAGTCC ATATTGTTTA 003760 003761 ATATTAAGTT GAATAAAATA AATTTTATTT CAGTCAGAGC CTAAATCACA TTTTGATTGT CTGAATTTTT GATACTATTT 003840 003841 TTAAAATCAT GCTAGTGGCg gctgggcgtg gtagctcacg cctgtaatcc cagcattttg ggaggccgaa gtgggtggat 003920 003921 cacgaggtcg ggagttcgag accagcttgg ccaaaatggt gaaaccccat ctgtactaaa aactacaaaa attagctggg 004000 004001 cgcggtggca ggtgcctgta atcccagcta cctgggagtc tgaggcagga gaattgcttg aaccctggcg acagaggatg 004080 004081 cagtgagcca agatggtgcc actgtactcc agactgggcg acagagtgag actctgtctc aaaaaaaaaa aaaaaaTCAT 004160 004161 GCTAGTGCCA AGAGCTACTA AATTCTTAAA ACCGGCCCAT TGGACCTGTA CAGATAAAAA ATAGATTCAG TGCATAATCA 004240 004241 AAATATGATA ATTTTAAAAT CTTAAGTAGA AAAATAAATC TTGATGTTTT AAATTCTTAC GAGGATTCAA TAGTTAATAT 004320 004321 TGATGATCTC CCggctgggt gcagtggctc acgcctgtaa tcccagcagt tctggaggct gaggtgggcg aatcacttca 004400 004401 ggccaggagt tcaagaccag tctgggcaac atggtgaaac ctcgtttcta ctaaaaatac aaaaattagc cgggcgtggt 004480 004481 tgcacacact tgtaatccca gctactcagg aggctaagaa tcgcatgagc ctaggaggca gaggttgcag agtgccaagg 004560 004561 gctcaccact gcattccagc ctgcccaaca gagtgagaca ctgtttctga aaaaaaaaaa tatatatata tatatatata 004640 004641 tgtgtgtata tatatatgta tatatatatG ACTTCCTATT AAAAACTTTA TCCCAgtcgg gggcagtggc tcacgcctgt 004720 004721 aatcccaaca ctttgggagg ctgaggcagg tggatcacct gaagtccgga gtttgagacc agcctggcca acatggtgaa 004800 004801 accccatctc tactaaaaat acaaaactta agccaggtat ggtggcgggc acctgtaatc ccagttactt gggaggctga 004880 004881 ggcaggagaa tcgtttaaac ccaggaggtg gaggttgcag tgagctgaga tcgtgccatt gcactctagc ctgggcaaca 004960 004961 agagtaaaac tccatcttaa aGGTTTGTTT GTTTTTTTTT AATCCGGAAA CGAAGAGGCG TTGGGCCGCT ATTTTCTTTT 005040 005041 TCTttctttc tttctttctt tttttttttt tctgagacgg agtctagctc tgctgcccag gctggagtac aatgacacga 005120 005121 tgttggctca ctgcaacctc cacctcctgg gttcaagcga ttctcctgcc tcagcctccc aagtacctgg gattacaggc 005200 005201 acctgccact acacctggcg aatatttgtt ttttttagta gagacgggct tttaccatgt taggctggtc tcaaactcct 005280 005281 gacctcaggt gatctgcctg ccttggcctc ccaaagtgct gggattacag gtgcaggcca ccacacccgg ccTTGGGCCA 005360 005361 CTGTTTTCAA AGTGAATTGT TTGTTGTATC GAGTCCTTAA GTATGGATAT ATATGTGACC CTAATTAAGA ACTACCAGAT 005440 005441 TGGATCAACT AATCATGTCA GCAATGTAAA TAACTTTATT TTTCATATTC AAAATAAAAA CTTTCTTTTA TTTCTGGCCC 005520 005521 CTTTATAACC AGCATCTTTT TGCTTTAAAA AATGACCTGG CTTTGTATTT TTTTAGTCTT AAACATAATA AAAATATTTT 005600 005601 TGTTCTAATT TGCTTTCATG AGTGAAGATT ATTGACATCG TTGGTAAATT CTAGAATTTT GATTTTGTTT TTTAATTTGA 005680 005681 AGAAAATCTT TGCTATTATT ATTTTTTCCA AGTGGTCTGG CATTTTAAGA ATTAGTGCTA ATAACGTAAC TTCTAAATTT 005760 005761 GTCGTAATTG GCATGTTTAA TAGCATATCA AAAAACATTT TAAGCCTGTG GATTCATAGA CAAAGCAATG AGAAACATTA 005840 005841 GTAAAATATA AATGGATATT CCTGATGCAT TTAGGAAGCT CTCAATTGTC TCTTGCATAG TTCAAGGAAT GTTTTCTGAA 005920 005921 TTTTTTTAAT GCTTTTTTTT TTTTTGAAAG AGGAAAACAT ACATTTTTAA ATGTGATTAT CTAATTTTTA CAACACTGGG 006000 006001 CTATTAGGAA TAACTTTTTA AAAATTACTG TTCTGTATAA ATATTTGAAA TTCAAGTACA GAAAATATCT GAAACAAAAA 006080 006081 GCATTGTTGT TTGGCCATGA TACAAGTGCA CTGTGGCAGT GCCGCTTGCT CAGGACCCAG CCCTGCAGCC CTTCTGTGTG 006160 006161 TGCTCCCTCG TTAAGTTCAT TTGCTGTTAT TACACACACA GGCCTTCCTG TCTGGTCGTT AGAAAAGCCG GGCTTCCAAA 006240 006241 GCACTGTTGA ACACAGGATT CTGTTGTTAG TGTGGATGTT CAATGAGTTG TATTTTAAAT ATCAAAGATT ATTAAATAAA 006320 006321 GATAATGTTT GCTTTTCTA |
Predicted Small Protein
Name | NONHSAT039304_smProtein_5111:5281 |
Length | 57 |
Molecular weight | 6302.2366 |
Aromaticity | 0.142857142857 |
Instability index | 49.2823214286 |
Isoelectric point | 7.93939208984 |
Runs | 9 |
Runs residual | 0.00741608118657 |
Runs probability | 0.049078490255 |
Amino acid sequence | MTRCWLTATSTSWVQAILLPQPPKYLGLQAPATTPGEYLFFLVETGFYHVRLVSNS |
Secondary structure | LLEEEEELLLLHHHHHHHLLLLLLLLLLLLLLLLLLEEEEEEEELLEEEEEEEELL |
PRMN | - |
PiMo | - |