NONHSAT039304

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT039304

Source

NONCODE4.0

Same with

,

Classification

sense

Length

6339 nt

Genomic location

chr14-:92524896..92572965

Exon number

5

Exons

92524896..92530758,92537279..92537397,92547309..92547405,92548644..92548810,92572873..92572965

Genome context

Sequence
000001 gagaggggca gggggcggag ctggaggggg tggttcggcg tggggGCCGT TGGCTCCAGA CAAATAAACA TGGAGTCCAT 000080
000081 CTTCCACGAG AAAAGTCCAT AAAACAGACC TGGAACGAGT GTTAGAAGCA AATGATGGCT CAGGAATGTT AGACGAAGAT 000160
000161 GAGGAGGATT TGCAGAGGGC TCTGGCACTA AGTCGCCAAG AAATTGACAT GGAAGATGAG GAAGCAGATC TCCGCAGGGC 000240
000241 TATTCAGCTA AGTATGCAAG GTAGTTCCAG AAACATATCT CAAGATATGA CACAGACATC AGGTACAAAT CTTACTTCAG 000320
000321 AAGAGCTTCG GAAGAGACGA GAAGCCTACT TTGAAAAAca gcagcaaaag cagcaacagc agcagcagca gcagcagcag 000400
000401 GGGGACCTAT CAGGACAGAG TTCACATCCA TGTGAAAGGC CAGCCACCAG TTCAGGAGCA CTTGGGAGTG ATCTAGGTGA 000480
000481 TGCTATGAGT GAAGAAGACA TGCTTCAGGC AGCTGTGACC ATGTCTTTAG AAACTGTCAG AAATGATTTG AAAACAGAAG 000560
000561 GAAAAAAATA ATACCTTTAA AAAATAATTT AGATATTCAT ACTTTCCAAC ATTATCCTGT GTGATTACAG CATAGGGTCC 000640
000641 ACTTTGGTAA TGTGTCAAAG AGATGAGGAA ATAAGACTTT TAGCGGTTTG CAAACAAAAT GATGGGAAAG TGGAACAATG 000720
000721 CGTCGGTTGT AGGACTAAAT AATGATCTTC CAAATATTAG CCAAAGAGGC ATTCAGCAAT TAAAGACATT TAAAATAGTT 000800
000801 TTCTAAATGT TTCTTTTTCT TTTTTGAGTG TGCAATATGT AACATGTCTA AAGTTAGGGC ATTTTTCTTG GATCTTTTTG 000880
000881 CAGACTAGCT AATTAGCTCT CGCCTCAGGC TTTTTCCATA TAGTTTGTTT TCTTTTTCTG TCTTGTAGGT AAGTTGGCTC 000960
000961 ACATCATGTA ATAGTGGCTT TCATTTCTTA TTAACCAAAT TAACCTTTCA GGAAAGTATC TCTACTTTCC TGATGTTGAT 001040
001041 AATAGTAATG GTTCTAGAAG GATGAACAGT TCTCCCTTCA ACTGTATACC GTGTGCTCCA GTGTTTTCTT GTGTTGTTTT 001120
001121 CTCTGATCAC AACTTTTCTG CTACCTGGTT TTCATTATTT TCCCACAATT CTTTTGAAAG ATGGTAATCT TTTCTGAGGT 001200
001201 TTAGCGTTTT AAGCCCTACG ATGGGATCAT TATTTCATGA CTGGTGCGTT CCTAAACTCT GAAATCAGCC TTGCACAAGT 001280
001281 ACTTGAGAAT AAATGAGCAT TTTTTAAAAT GTGTGAGCAT GTGCTTTCCC AGATGCTTTA TGAATGTCTT TTCACTTATA 001360
001361 TCAAAACCTT ACAGCTTTGT TGCAACCCCT TCTTCCTGCG CCTTATTTTT TCCTTTCTTC TCCAATTGAG AAAACTAGGA 001440
001441 GAAGCATAGT ATGCAGGCAA GTCTCCTTCT GTTAGAAGAC TAAACATACG TACCCACCAT GAATGTATGA TACATGAAAT 001520
001521 TTGGCCTTCA ATTTTAATAG CAGTTTTATT TTATTTTTTC TCCTATGACT GGAGCTTTGT GTTCTCTTTA CAGTTGAGTC 001600
001601 ATGGAATGTA GGTGTCTGCT TCACATCTTT TAGTAGGTAT AGCTTGTCAA AGATGGTGAT CTGGAACATG AAAATAATTT 001680
001681 ACTAATGAAA ATATGTTTAA ATTTATACTG TGATTTGACA CTTGCATCAT GTTTAGATAG CTTAAGAACA ATGGAAGTCA 001760
001761 CAGTACTTAG TGGATCTATA AATAAGAAAG TCCATAGTTT TGATAAATAT TCTCTTTAAT TGAGATGTAC AGAGAGTTTC 001840
001841 TTGCTGGGTC AATAGGATAG TATCATTTTG GTGAAAACCA TGTCTCTGAA ATTGATGTTT TAGTTTCAGT GTTCCCTATC 001920
001921 CCTCATTCTC CATCTCCTTT TGAAGCTCTT TTGAATGTTG AATTGTTCAT AAGCTAAAAT CCAAGAAATT TCAGCTGACA 002000
002001 ACTTCGAAAA TTATAATATG GTATATTGCC CTCCTGGTGT GTGGCTGCAC ACATTTTATC AGGGAAAGTT TTTTGATCTA 002080
002081 GGATTTATTG CTAACTAACT GAAAAGAGAA GAAAAAATAT CTTTTATTTA TGATTATAAA ATAGCTTTTT CTTCGATATA 002160
002161 ACAGATTTTT TAAGTCATTA TTTTGTGCCA ATCAGTTTTC TGAAGTTTCC CTTACACAAA AGGATAGCTT TATTTTAAAA 002240
002241 TCTAAAGTTT CTTTTAATAG TTAAAAATGT TTCAGAAGAA TTATAAAACT TTAAAACTGC AAGGGATGTT GGAGTTTAGT 002320
002321 ACTACTCCCT CAAGATTTAA AAAGCTAAAT ATTTTAAGAC TGAACATTTA TGTTAATTAT TACCAGTGTG TTTGTCATAT 002400
002401 TTTCCATGGA TATTTGTTCA TTACCTTTTT CCATTGAAAA GTTACATTAA ACTTTTCATA CACTTGAATT GATGAGCTAC 002480
002481 CTAATATAAA AATGAGAAAA CCAATATGCA TTTTAAAGTT TTAACTTTAG AGTTTATAAA GTTCATATAT ACCCTAGTTA 002560
002561 AAGCACTTAA GAAAATATGG CATGTTTGAC TTTTAGTTCC TAGAGAGttt ttgtttttgt ttttgttttt ttttgagacg 002640
002641 gagtcttgct atgtctccca ggctggaggg cagtggcatg atctcggctc actacaactt ccacctcccg ggttcaagca 002720
002721 attctcctgc ctcagcctcc agagtagctg ggattacagg cgcccaccac cacacccggc agatttttgt atttttggta 002800
002801 gagacgcggt ttcatcatgt ttggccaggc tggtctcgaa ctcctgacct caggtgatcc gcctgccttg gcctcccaaa 002880
002881 gtgttgggat tacaggcatg agccactgcg cctggccAGC TAGAGAGTTT TTAAAGCAGA GCTGAGCACA CACTGGATGC 002960
002961 GTTTGAATGT GTTTGTGTAG TTTGTTGTGA AATTGTTACA TTTAGCAGGC AGATCCAGAA GCACTAGTGA ACTGTCATCT 003040
003041 TGGTGGGGTT GGCTTAAATT TAATTGACTG TTTAGATTCC ATTTCTTAAT TGATTGGCCA GTATGAAAAG ATGCCAGTGC 003120
003121 AAGTAACCAT AGTATCAAAA AAGTTAAAAA TTATTCAAAG CTATAGTTTA TACATCAGGT ACTGCCATTT ACTGTAAACC 003200
003201 ACCTGCAAGA AAGTCAGGAA CAACTAAATT CACAAGAACT GTCCTGCTAA GAAGTGTATT AAAGATTTCC ATTTTGTTTT 003280
003281 ACTAATTGGG AACATCTTAA TGTTTAATAT TTAAACTATT GGTATCATTT TTCTAATGTA TAATTTGTAT TACTGGGATC 003360
003361 AAGTATGTAC AGTGGTGATG CTAGTAGAAG TTTAAGCCTT GGAAATACCA CTTTCATATT TTCAGATGTC ATGGATTTAA 003440
003441 TGAGTAATTT ATGTTTTTAA AATTCAGAAT AGTTAATCTC TGATCTAAAA CCATCAATCT ATGTTTTTTA CGGTAATCAT 003520
003521 GTAAATATTT CAGTAATATA AACTGTTTGA AAAGGCTGCT GCAGGTAAAC TCTATACTAG GATCTTGGCC AAATAATTTA 003600
003601 CAATTCACAG AATATTTTAT TTAAGGTGGT GCTTTTTTTT TTTGTCCTTA AAACTTGATT TTTCTTAACT TTATTCATGA 003680
003681 TGCCAAAGTA AATGAGGAAA AAAACTCAAA ACCAGTTGAG TATCATTGCA GACAAAACTA CCAGTAGTCC ATATTGTTTA 003760
003761 ATATTAAGTT GAATAAAATA AATTTTATTT CAGTCAGAGC CTAAATCACA TTTTGATTGT CTGAATTTTT GATACTATTT 003840
003841 TTAAAATCAT GCTAGTGGCg gctgggcgtg gtagctcacg cctgtaatcc cagcattttg ggaggccgaa gtgggtggat 003920
003921 cacgaggtcg ggagttcgag accagcttgg ccaaaatggt gaaaccccat ctgtactaaa aactacaaaa attagctggg 004000
004001 cgcggtggca ggtgcctgta atcccagcta cctgggagtc tgaggcagga gaattgcttg aaccctggcg acagaggatg 004080
004081 cagtgagcca agatggtgcc actgtactcc agactgggcg acagagtgag actctgtctc aaaaaaaaaa aaaaaaTCAT 004160
004161 GCTAGTGCCA AGAGCTACTA AATTCTTAAA ACCGGCCCAT TGGACCTGTA CAGATAAAAA ATAGATTCAG TGCATAATCA 004240
004241 AAATATGATA ATTTTAAAAT CTTAAGTAGA AAAATAAATC TTGATGTTTT AAATTCTTAC GAGGATTCAA TAGTTAATAT 004320
004321 TGATGATCTC CCggctgggt gcagtggctc acgcctgtaa tcccagcagt tctggaggct gaggtgggcg aatcacttca 004400
004401 ggccaggagt tcaagaccag tctgggcaac atggtgaaac ctcgtttcta ctaaaaatac aaaaattagc cgggcgtggt 004480
004481 tgcacacact tgtaatccca gctactcagg aggctaagaa tcgcatgagc ctaggaggca gaggttgcag agtgccaagg 004560
004561 gctcaccact gcattccagc ctgcccaaca gagtgagaca ctgtttctga aaaaaaaaaa tatatatata tatatatata 004640
004641 tgtgtgtata tatatatgta tatatatatG ACTTCCTATT AAAAACTTTA TCCCAgtcgg gggcagtggc tcacgcctgt 004720
004721 aatcccaaca ctttgggagg ctgaggcagg tggatcacct gaagtccgga gtttgagacc agcctggcca acatggtgaa 004800
004801 accccatctc tactaaaaat acaaaactta agccaggtat ggtggcgggc acctgtaatc ccagttactt gggaggctga 004880
004881 ggcaggagaa tcgtttaaac ccaggaggtg gaggttgcag tgagctgaga tcgtgccatt gcactctagc ctgggcaaca 004960
004961 agagtaaaac tccatcttaa aGGTTTGTTT GTTTTTTTTT AATCCGGAAA CGAAGAGGCG TTGGGCCGCT ATTTTCTTTT 005040
005041 TCTttctttc tttctttctt tttttttttt tctgagacgg agtctagctc tgctgcccag gctggagtac aatgacacga 005120
005121 tgttggctca ctgcaacctc cacctcctgg gttcaagcga ttctcctgcc tcagcctccc aagtacctgg gattacaggc 005200
005201 acctgccact acacctggcg aatatttgtt ttttttagta gagacgggct tttaccatgt taggctggtc tcaaactcct 005280
005281 gacctcaggt gatctgcctg ccttggcctc ccaaagtgct gggattacag gtgcaggcca ccacacccgg ccTTGGGCCA 005360
005361 CTGTTTTCAA AGTGAATTGT TTGTTGTATC GAGTCCTTAA GTATGGATAT ATATGTGACC CTAATTAAGA ACTACCAGAT 005440
005441 TGGATCAACT AATCATGTCA GCAATGTAAA TAACTTTATT TTTCATATTC AAAATAAAAA CTTTCTTTTA TTTCTGGCCC 005520
005521 CTTTATAACC AGCATCTTTT TGCTTTAAAA AATGACCTGG CTTTGTATTT TTTTAGTCTT AAACATAATA AAAATATTTT 005600
005601 TGTTCTAATT TGCTTTCATG AGTGAAGATT ATTGACATCG TTGGTAAATT CTAGAATTTT GATTTTGTTT TTTAATTTGA 005680
005681 AGAAAATCTT TGCTATTATT ATTTTTTCCA AGTGGTCTGG CATTTTAAGA ATTAGTGCTA ATAACGTAAC TTCTAAATTT 005760
005761 GTCGTAATTG GCATGTTTAA TAGCATATCA AAAAACATTT TAAGCCTGTG GATTCATAGA CAAAGCAATG AGAAACATTA 005840
005841 GTAAAATATA AATGGATATT CCTGATGCAT TTAGGAAGCT CTCAATTGTC TCTTGCATAG TTCAAGGAAT GTTTTCTGAA 005920
005921 TTTTTTTAAT GCTTTTTTTT TTTTTGAAAG AGGAAAACAT ACATTTTTAA ATGTGATTAT CTAATTTTTA CAACACTGGG 006000
006001 CTATTAGGAA TAACTTTTTA AAAATTACTG TTCTGTATAA ATATTTGAAA TTCAAGTACA GAAAATATCT GAAACAAAAA 006080
006081 GCATTGTTGT TTGGCCATGA TACAAGTGCA CTGTGGCAGT GCCGCTTGCT CAGGACCCAG CCCTGCAGCC CTTCTGTGTG 006160
006161 TGCTCCCTCG TTAAGTTCAT TTGCTGTTAT TACACACACA GGCCTTCCTG TCTGGTCGTT AGAAAAGCCG GGCTTCCAAA 006240
006241 GCACTGTTGA ACACAGGATT CTGTTGTTAG TGTGGATGTT CAATGAGTTG TATTTTAAAT ATCAAAGATT ATTAAATAAA 006320
006321 GATAATGTTT GCTTTTCTA
[back to top]

Predicted Small Protein

Name NONHSAT039304_smProtein_5111:5281
Length 57
Molecular weight 6302.2366
Aromaticity 0.142857142857
Instability index 49.2823214286
Isoelectric point 7.93939208984
Runs 9
Runs residual 0.00741608118657
Runs probability 0.049078490255
Amino acid sequence MTRCWLTATSTSWVQAILLPQPPKYLGLQAPATTPGEYLFFLVETGFYHVRLVSNS
Secondary structure LLEEEEELLLLHHHHHHHLLLLLLLLLLLLLLLLLLEEEEEEEELLEEEEEEEELL
PRMN -
PiMo -