NONHSAT039675
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT039675 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3412 nt |
Genomic location |
chr14+:100745713..100749124 |
Exon number |
1 |
Exons |
100745713..100749124 |
Genome context |
|
Sequence |
000001 GGATTGGTGA CCTACTAACA GTGACCCTGT GGCTCTGTGG AATTTTGAAG TGCCTTTTGT GAATCATGAA TGAAACATTT 000080
000081 AACTTGAGAC CCTTTAAAAA ATTCATCCAG AATCTGTTAC CCCTTGGGTA GTTTGATGGA ACTGAGTTAA GCAGAAGACC 000160 000161 CCAGCTGTTT TCTGGGTAAG CCAGGCTTTG CTGTATCTGG CAGTCAGGAG AGAGGTCAGC CCATGGTGGA GGTCTTCAGT 000240 000241 GCCGAGGGCT CGGATGAGAA CGTGTAGTTC TTTGACTTGG ACCTGGGCAG CGTCTTCTAT GGATGCCTGC CTTGTGAGCA 000320 000321 CCCACACCTT CCCTCCCCAC TGTCGGGTTG AGTAGCCCCA GCGTGGCTGT GTTAGGAGTC CTTTGCCCAA CATTGTGCTG 000400 000401 CACTGGAGCC TGGCCCTGGC ACTGTCCTCA GGACCCTGCC CAAGGGCCCA CCGCAGAGCA CACCTATGCT ATGGGGAGCC 000480 000481 CTGCTGGCAG CCCCGAGAGC CATGCCATGG CCTGCAGGAG CCAGGCTCCT GTGTGGATGA AGTCCCTCTT CCTCTGTGCC 000560 000561 TTGATCCCTT GGGGGTGCCT TTGGTCATCT CTTCTGTCCT TTCCTGTCTC TGAAATAGTC ATCACTCCCC TTGACTCTCT 000640 000641 CTGTTCACGT CTTCTCAGTC TGCAGAGTTA ACTTCTGTAA GGAGTTTAAT CTGGGGTTCC AAGAAAACAA GTTCCTTGTT 000720 000721 AACATAGCAC TGACTTTGCA ACAATAGAAA ACTAACAAAT GAGCAACAAT ATAAAGAGTA GAGGTAGTTC TCATTGGGTG 000800 000801 TAACTTCAAC CCATTCTGCT TGTGGTTAGA ATTTATAATT TTGCTAACGA TGTAATTTAC TAAGGTTTGA AATGGTATTC 000880 000881 TAACAGTGAG TCCATTGTCT TGAGGATTAA TCTGATTTAT AAGTAATACT GATAGACATA TTTTCGTACA TCTGAGCAGA 000960 000961 AATAAATGCA TGTTTCTAGC ATATGTAATA TAAAAACTCC AGAGGATAAG TTTACACTTA ACAAGATGTT GTTTTCTATT 001040 001041 TTTGAATTTC TTATTATTTC CCCCTTTTTG GTAGTGGAGT TGAGAGGGGG AGCATACTAT TTGTATAAAG AACTGTCACC 001120 001121 CCAGAGTGAC ATTTATTTTC CAAGATGACC CTGAACTCAT GCTGTTGGTT TCATATGGTG TTTGTGTGCT TTGCCTAGAT 001200 001201 TCAAGGCCTG AGGATTTGAG GAAAATCGGG ATTTTTTTTT TCCTATTTGG TTTTCATGTA AAAGTTCTAA ATGTCACTTA 001280 001281 TTTTGCTAAA TAAGACCCTT TCACAGGATA GTGTGCGCAA TACCTGTCCG TGTTTCCAAG CAGAGTTCAA GTTCATGTCT 001360 001361 TCACAAGTAG ATGAGAGTCA CTTCCAGTCG GGGGAAGCCC GCCTGAGCAG TGTTTTGAGA GTGCGTACAT TGGAGGACTG 001440 001441 CCCCACGTCC GTTTGCACTC TGCCTTGCAA AACTTACTGT GGAGACGTGT CCCAGACTGG TCTCAGACCA GAGTTTGTGG 001520 001521 CACAGGAAAA CCTGGCCCCC TAAAAAGAAG TTTTGGAATT GGAAGCCTGA TAATTTCGGG AGGCTGAGGC AGGAGAACGG 001600 001601 CGTGAACCCG GGAGGCGGAG CTTGCAGTGA GCCGAGATCG CACCACTGCA CTCCAGCCTG GGTGACAGAG CAAGACTCCG 001680 001681 TCTCCCAAAA AAAAAAAAAA AAAAAAAAAA AAGGAAACCT GACAATTCTA CCCACCTCCC CCCACCCCCG ACTATAGGCA 001760 001761 AAGAGAGTTG ATCACTTCCA GGGTCTCTGA CTTCTGTGAC CTGGAAATCA GCCTGGCTTG GGAAATTCAT GTTGTTGATC 001840 001841 TTTAATTATT TAATTATTCT TTAATAATCC TTCTATTTTC TTGACATCTG ACCCCCAGCA AGAGTAAGGA TCCCAGAGGT 001920 001921 CAAAACAGTG GTGAGAGCCA AGCTGCTCAC AGACACCCAC TTGATGCCAC AGCCATGCCA TGAGGCTTCC TCCCAGCTGC 002000 002001 TCTGCTGGCT TGCTGAAGCC AGCTCTGAGT CACAGGGTTG CCTTGGACCC TCGGCTGTAG GGGGCACCTG TCTGGCTCCG 002080 002081 GGCCCTTTGT CCTGGATACA CTGACAGTAA TGTGAGCGCA GCACTTCAGA GTTCAGGCCC AGCAGGTCCT GGCAAGTGCA 002160 002161 TTCCACCCGA ACTTTTAACC CAAGCGGTGG GGAAGGAAGC CAAAACTCCA AGCTGCACTT TCTTGGGGTT CTGGCCATGC 002240 002241 ACTTCTTAGC CTTCTCTCTG ACTTTACAGG ACAAAAGGTA CCCCACGCCT TCAGAATCAT GCTTACCTGC ACGGCAGCAT 002320 002321 CTGACTGGAT GGCTGGCTAG GTCTCATCCA CCCCAAATTA CTGACCCTTG ATTTATGTTG TTACTGCTCA GGTTATGCTC 002400 002401 AGATGCCCTG GTTGCCTGAA GATGGTTTAA GTGCAGGCCC TTCAGACAAG TCACGTCAGG CAAGAGAGGG CTGGCCTCTG 002480 002481 ACCCACAAGA GGGCAGATTT GTGGCCAAGA GGCTTCCTGG CATCCACCCC CAGGCCCAAG GGATCAGTGT GGTGCCAGAG 002560 002561 AGGATCTTTA AGCTGGGACT GTACTGAGGC TTGATGGGAA GTATGGGCAG CATGTACTTG ACACGTTATC ACCCAGTCCC 002640 002641 CTTGTAAAAT CTGGAATGGA GCGTTTAAGC TGAGCGTTAG CATCAGGTCA GCAGGCAAAG CAAACCTCCC ACAAACTGGG 002720 002721 TGCCGTAAGG TGGGAGGTGA CACATGGAGA GCTTCGTCCT GGCCGAGCAG GCACCCAGCC CCATGTCCCC CGCCAGCATT 002800 002801 CTGGATGTCA GAGGAGGGTG CGTGTGATGG CGTCACATTC ATCTGAAGCA CACTGATTGA TTTTCCACAA GGTGGCAAGT 002880 002881 TTGATCAAAT TGACCGCTTT TCATGAGACA CCCAGATGCT GTAAAAAAAA AAAACAGCAC TGGGATGTGT TGAGGAGGGG 002960 002961 GCAGTTTGCT GTGCTCTGTT CTGTCTGCTG CTCTCTCTGG GGGCCGCACA ATGTCCGCAC ACATCACGGA GGGGAGAAAG 003040 003041 GCATCAGTAC CAAACGGAAC AACCTCTTTT TTCTACATTG TCCATACCCG GACATGTGAG GCTCTATTAT CAACAGGTGG 003120 003121 TGAGAAAAAT TATGTTTTTA TTCGCTTTCT GGTAACTTCT GTAGGCCCTG GCTCAAGGAC TTAGCATTTC GTCTCATGTA 003200 003201 CATCTTTTTC TTAAGTGTTC TTTGCCATTT CTGGAATTGT CCTTGGTTTT TCCTTAGCTC ATAGGTCATA GATGCAGAAA 003280 003281 TATAGTATTT AAGGCATCCG CATCCAGCAT CAGATGGCTT TGCATCCAGA AAAACATTGA TAACTCAGTT TGAAGCACCA 003360 003361 AGCATGTGTA ATATGGCTCT ATACAATATA ATAAATGCAT AATGTTAAGC TT |
Predicted Small Protein
Name | NONHSAT039675_smProtein_470:670 |
Length | 67 |
Molecular weight | 7108.3518 |
Aromaticity | 0.0757575757576 |
Instability index | 93.9606060606 |
Isoelectric point | 6.50115966797 |
Runs | 11 |
Runs residual | 0.0160587915079 |
Runs probability | 0.0692938928233 |
Amino acid sequence | MGSPAGSPESHAMACRSQAPVWMKSLFLCALIPWGCLWSSLLSFPVSEIVITPLDSLCSR LLSLQS |
Secondary structure | LLLLLLLLHHHHHHHHLLLLHHHHHHHHHHHLLLLHHHHHHHLLLLLEEEELLLHHHHHH HHHLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLL LLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTooooooooooooo oooooo |