NONHSAT040212
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT040212 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
3137 nt |
Genomic location |
chr14-:104200090..104204033 |
Exon number |
2 |
Exons |
104200090..104201532,104202340..104204033 |
Genome context |
|
Sequence |
000001 ATGGTACGCA GGGGAGGCCT GGGGCCACAG TGGTGCTGTC TGCTGTGGTA CTGCCATGGC AACAGTCAGC CGGTGCCAGA 000080
000081 GAAGCTTCAG CACAGCtttc tgtttgtttt ttttaagaca ggagacaagg tctcattctg tcacccaggc tggagtgcaa 000160 000161 tgtcgcaatc atggctcact gcagcctcga cctcccgggc tcaattgatc ctcccacttc agcctcccaa gtagctggga 000240 000241 ctacaggctt gtcccaccac agccagctaa ttttttgtac tttttttttt tttttgtaga gacagtgttt cgccatgttg 000320 000321 cccagggtgg tctcgaactt ctgggctcca gcgatctgcc cactttcagc ctcctaaagt gctgggatca caggtgtgag 000400 000401 ccaccgtgcc tggcAGCACA GCATTCTCGA GCTGTTCCAC CTTCTTCAGG GGCAGCCAGG ATGTCTCACT CGAGTGAAGG 000480 000481 TCACACTGCC CCTTGTTTTC ATTCCTGAAA ACATGTTTGA AAGTCCATGT TGTTAGAAGG ATTCTGTGCC AGATTCCCAA 000560 000561 GAAAACAAAA TGACTTGGCT GTGCTTTGCA TAGATGTTCT GTACCCTTGC TTCTGGAAGC AGGGCCAGCT CCTTTCCTGG 000640 000641 GGTGGCCTGG GGCCCTGGCC ATTCCCCGGA AACATTTGAT GAATGAGGCT CATGTCCTAA TTAAGCTGCT TTAGCCAGGG 000720 000721 CCGCATTTTC CAAGAGCTGG AACATCTTCT CTATTCTGAG TATTAAACAG TCACAAGtca tttattccac acattacttg 000800 000801 agaacatact atgtgcccta cactggactc taggTTTGAA ATTATCCATG AAAACAGCCA TGTGATGCCC TCTTTGGCCC 000880 000881 AAGCTCCCAC AACAGAGCCA AGCAACAAAC TCTCAGGCTG TGTGGCAGGG CTAGGGGAGG CACAGCAGCC CCCAGGTGAG 000960 000961 TCCCGCCAGT GTGAGGAGGA GGCTGCCGTC ACAGTGGCAC CACCACAGGG AAGGGAAGCT CCCCATGGTC ACCACAACTG 001040 001041 GGTCTCAGAA GCAGAGTGTC CCACAGAAGG GCCCTTTCTT GGGAACCCAC AAGTAGCTGC TCAGTCAGGG CTCAGTTGTG 001120 001121 TGTAGTTTGT TCATTACCAT CCAAGAGCAG TCACAGCTGC TCTAGCTAGT GACTTTAGAA ATCTGTTCTG GCTGTGATTG 001200 001201 CTAAGCGTCA CCTTAAGAAC AGCACACTCT TGCCCTGGGG CTCAGGAGCT CGTTTGTCCT GTCTGTCCTG CAGGACTTAG 001280 001281 AAAGGGCCGG CAGCAGGAGC AGCAGCTGGG CCGGGCAGGG GAGGTATCGG GTGGGGGCCC TAGTCTTCAA TAGTGTCTCA 001360 001361 TCTCCCTCGC TGGCCTCTGT GGGGCCTGCT GAGAGCAGCC TCGGCAGCAG CACGACTGTG TCCTGTTCCT CGAGCAGGGT 001440 001441 CCCTTGCTGC AGGCCACCCT CTGCTGAGGC CTGACCATTG CTCTCTGGCT CCAGGGGTGC AGGAAAAGCT GGGTGTGATG 001520 001521 AACAAAGGTG TGGCGTATGC TCTGTGGGAC TACGAGGCCC AGAACAGTGA CGAGCTGTCC TTCCACGAAG GGGACGCCCT 001600 001601 CACCATCCTG AGGCGCAAGG ACGAAAGCGA GACTGAGTGG TGGTGGGCTC GCCTTGGAGA CCGGGAGGGC TATGTGCCCA 001680 001681 AAAACCTGCT GGGGCTGTAT CCACGGATCA AACCCCGACA GCGAACACTC GCCTGAACTT CCTTTTGGAG CACCGCATGG 001760 001761 TCTTGCCAGC TACCAGGAGC CACTTAAGAG ATTATTGTGC TGTTTTCCAG GAAAGCTGCA GCTAGAAAAT GGTCTTAATG 001840 001841 GTGCTCACTT TAGCAGACAG CGTCCACAAT GTGAATCCTA CAGTTTCCAG GTGAGGCCCT TTCTCCAGTT TGCCCATTAA 001920 001921 CTGGGAGAGG TACTTTCGCC TCCAAGGACT GAATTTTGCC AATTACTATA AATCCAAATA AATACCCACT TTCAAAACAC 002000 002001 CCACCCCTCT TGCCATTAAG AAGTCCCATA ACCCCCGGTT GGTTGCCAGT GAAGACAGAA GCTCTTACTG ACTTGGCCCC 002080 002081 GAGGCCATCA CCCCCTCCAG CAGTGAACAC TGTCCGCCGC TGTGAGGCCT GCTCCCCTGC GACCGCCCTG CCCCCCGTCA 002160 002161 CCGAATCGGA CACTCATCCT TTCTCACACT TCCCACACAT GATCCTTCTT CCCTTCATCA CCAAAGGAGC CTCTGTATGG 002240 002241 AAACATGTCC AGTGTTGCTG CCCAGTGTGT ATGCCTCCCA GTACCCACTC TGCTCGGCCG CCTTGGGGGT TCCGCTTCCT 002320 002321 GTTCCAGTTC ACCTAAAGGC TGATTGTGCA GGCCCAGCAC TGTGGCTGGA CTGCCGCGCC ACGGGCACCA GGACCCCTAA 002400 002401 GACCAAGTGA CAACTGGGAG AGCCTCAGCA TATACTCTTC TCCTCCGATC TCACAGCCTG TCATGCTGCT CAGTGTGGTT 002480 002481 CTCACCCCTG CAAGCTCAAA TTCAGTTCCC TGAATGGAGT CAGGTGCTGG AGGCCGTGGC AGCGGAGGGT GGTTGGGGTT 002560 002561 GGGGCTGGGG GTGGACTGGT GTGAGGGCAG ACCAGGGCCA GGTAGACGGG GCTGTTTGGT GCCTGAAGGA TGGCAGACGC 002640 002641 CTGGTGTCAG GAGGGGCCGC CACCAAGGAG CAGCAGCTGG GGCAGAGGAG CTGGGGTCAG GGGCCACCCC TCTCTGCCGA 002720 002721 TCTCCCTGCC TGGGCTGGCT GTGAGGCCAC CTTTGTCCCA GGCCCAGCCT CAAGGCAAGG AGGGCGCTTC ACTGAGGTGT 002800 002801 GAATTGTACG TACAGGCTTT TTATATACCA AAAGTATTTT TTGACTAGAC CATTCAAAGC TACCCGAACT ATGTTGGAAA 002880 002881 TTTTTTTTTT CTCATTAAAA TACAGGCCCT TAGGCTCTAT TTTTCATGTA TGAGTCGTGT GTAATTTATG TAAAAATGTG 002960 002961 TGTACAGACT CACTGATGCA GCACTGTAGC CCATCACCTT GGAGCACTGA CTGTACATAG TGTGGTGAAG AAAAGTGAAC 003040 003041 GCCCTTGTAG AGCAGCCCGA CCACAGGAGC ATGGCCGCTG CCAGCCCAGA CGCTGCTGAC GCTGTGTAAA TGTGCACAAT 003120 003121 AAACCCGTCT CACCCCG |
Predicted Small Protein
Name | NONHSAT040212_smProtein_2513:2743 |
Length | 77 |
Molecular weight | 7670.5699 |
Aromaticity | 0.0526315789474 |
Instability index | 58.8631578947 |
Isoelectric point | 8.53924560547 |
Runs | 11 |
Runs residual | 0.00332728372656 |
Runs probability | 0.0284241460713 |
Amino acid sequence | MESGAGGRGSGGWLGLGLGVDWCEGRPGPGRRGCLVPEGWQTPGVRRGRHQGAAAGAEEL GSGATPLCRSPCLGWL |
Secondary structure | LLLLLLLLLLLLEELLLLLEELLLLLLLLLLLEEELLLLLLLLLLLLLLLLLHHHLHHHL LLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |