NONHSAT041106

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT041106

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

609 nt

Genomic location

chr15+:25458606..25467437

Exon number

6

Exons

25458606..25458737,25459121..25459165,25462360..25462489,25463587..25463711,25464075..25464119,25467306..25467437

Genome context

Sequence
000001 ATGGTGAGCC TGGAGGAAGA TTTGCATTGG GCCCAATGGC CCTGGGCCAG TGTCTGTCAG CCAGTTTCCC AGCCCCTGGT 000080
000081 GCACTGAAGC TCAGGCCTTT CCTGGCATCC TGGCCTCCTG CACTGAGCTG TGTGAGTGCT TCTGCCCAGG CAGGCCACTT 000160
000161 GGCATTGACC GGTATAGATG GTGAGCCTGG AGGAAGATGT GTGGGACCCG CAGGCCGAGG GCCAGTGTCT CTCAGCCAGG 000240
000241 TGCTCAGCCC CCAGTGGGCT GAAACTCTGA CCCTTCCTGG CACCCTGCTC TCCTGCACTG TGCTGTGATG GTGAGACTTC 000320
000321 TGTTGGGCTT GCTTTTCCTG GGCCAGTGTC CATCAGCCAG GTGCTCAGCC ATCGGTGCGC TGAAGCTCCA GCCCTTCCTG 000400
000401 GTGCCCTGAT CTCCTGCACT GAGCTGTGAT GATGAGCTCT TTCACCTAGG AGGGCCCCTT GGCATTGACT GGCATAGATG 000480
000481 GTGACCCTGA AGAAAGACTT CAGTTGGGCC TGAAGGCCCC GGGCCAGTGT CCATCATCCA GGTGCTCAGC TCCCAGTGCA 000560
000561 CTGAAGCTCA GACCCTTCCT GGTTCCCTGG TCTCTTGCAC TGAGCTCTG
[back to top]

Predicted Small Protein

Name NONHSAT041106_smProtein_35:307
Length 91
Molecular weight 8982.3714
Aromaticity 0.0444444444444
Instability index 47.0744444444
Isoelectric point 7.68792724609
Runs 15
Runs residual 0.0268077601411
Runs probability 0.0473532355886
Amino acid sequence MALGQCLSASFPAPGALKLRPFLASWPPALSCVSASAQAGHLALTGIDGEPGGRCVGPAG
RGPVSLSQVLSPQWAETLTLPGTLLSCTVL
Secondary structure LLLLLEELLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHLHHHHLLLLLLLLLLEELLLL
LLLEEEEEELLHHHHHHLLLLLLEEEEEEL
PRMN -
PiMo -