NONHSAT041184
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT041184 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
3130 nt |
Genomic location |
chr15+:26691492..26734856 |
Exon number |
8 |
Exons |
26691492..26692579,26694164..26694259,26696476..26697336,26699850..26700297,26701300..26701409,26703322..26703412,26704486..26704722,26734658..26734856 |
Genome context |
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Sequence |
000001 cattttgaag ggataaaatt caagccataa AAATCAGCAA CTTCATATAT ATATTTCCCT AACTTACTTT GTTTTATTTT 000080
000081 CCAGGTCATT GACTAACAAC ATCAACAATG AAATGAATCT GAGAAAACAG GAAATTGAGA GCAAGAGAAA AAAAAGTTAA 000160 000161 TTATACTGAT TTTGTATAAG ACCCCTTTGA ACACATTTTT AAAAAATCAA ATAGAAGGTG CCCAGGTCCA CTGTGCCTTG 000240 000241 TGAATATTTG TCTTGTATAT CCTAGAGATC TACGCATTCA TGTGGGAATT GAAAAGGACC CACATTTTAC TAGAAGCATC 000320 000321 GTTCATTTTT GCCTCAAAAC AATGCCCACA TGTCAGAAGA ACTTTCACAA TTCACAGGAA CAGTGACCTA ATTAACCAAC 000400 000401 CATAAAATTG CCAAATCCCT ACTTCTCATT GTTTAATATG CTTAGAAAAC CCATTCAAAT TGTGAATTAT CAAGTGAGCT 000480 000481 TACACTGATA AATAGATCCA ATATTTAGGA ATTTTTAAAT CTTCCATTCC TTTTTTTTTT TTGTCTTTTT AAAAATAGAA 000560 000561 CATTAGAATA TGTCCtccag gttttagaga tgggggagac atgcttccct ttatttctca gtaactcagc caaaaaaaat 000640 000641 ctggagagaa tgcaaagaca gctactggaa actttgaaaa gtagatgtga gcccatcagg gaagagctag agaatctgaa 000720 000721 atctactcga aaaagtgagt ttgatacttt gtgttcctat cctaactcca cacagcctga aacttggaag tgagcatgat 000800 000801 ggagtggata cagtgagatg cagaagaaat cctccagttt gggctggaag ggaaaaaaga gacccctaaa actcagagac 000880 000881 agtggaagaa attcctggtg tttttttctt ctctttttct ctgttctTCC ACATAGCAAt ttagtattga ctacagcatc 000960 000961 tctgttacaa tgatagcacc gaaatgttgt aaccatatgg cctgcaaagc caaaaatact tatctgacca tctacaggaa 001040 001041 aagtttgctg atcTGGATGA AATATTCTGA TACTAaatat tccattttGG AGGCTGATAT TCCTAATCTA TTCATAAGGA 001120 001121 TGGCATATCT ACCCAGTGGG CCTGCTGGGA CTCCAGTTAC CCGATGCACA TACATTGCTT GGTGTCTCAC CTCATCATTC 001200 001201 TATCTACTGA CTAGTTGGCC TTGAATTTGT TAATTTAAAC AAATTTGAAG TTTCAATGTT CTTGCAGCAA ACTCTAACAT 001280 001281 ACATACTTAA TGATTAAAGG CAAGACCTCA AGGGCAGATT GGAAAACTAA GAACAATGCT AAAAAAAAAA ATGACTTGCA 001360 001361 GGGTTTTTAC TAATTTCCAA AATTAAGTAA CAAATCACTG ACTTGAAAAT ATTTTTCACA GCAGCAGTGA TATCATCTAT 001440 001441 CTAGGTATGG TTTAAAACAC AAATCTCAAT TTTTCCTTTC CTTTAGCTGA AATAATAAAT AAGATAGATT TTGCTATGAT 001520 001521 TAGGAAGGAA AGATATCAGT GCCTAGATTA TCCCATATAA AGGAGTTCAC TCACTTTTAA GATGCAATCT ATTTTTGCCT 001600 001601 TAAATGTCTT CTGCAAACAG CCTTGCCACT TCAGTGCTTG TGAGTTGATG TATGTGTCAA GAGAACTGAG CCAGGTCCCG 001680 001681 GCTGTGCCGC AAATCATTCA CGTGGTGCAG ATGGACACAC GTTCTGTTAG TCAAATAAGC ATATTAGATT CAATGACTAT 001760 001761 GAAACTCTCC TTCCAGGTCA AATAGCCTGT TATTTGTGCA TTCCAGTATG ATCATTGCCA TTTATTTAAA GTATTTCTAC 001840 001841 CTATACAGAT ATTAGTTACT AGCGACTCAA GTACACGTTA GAATTAATTG TTTAAAAGAG CAAATAAACC TCTCACCGCA 001920 001921 ATGGCAATTA AAGACACCCA GTCCTGCTGT GTGCTTCCTC CATTTGCTTC TAGTGGCAGT TTCGTGTGCA TTTTTGGTGA 002000 002001 TGATGCTCCA CGGAACATCT GCAGATGTGC TGTCAATTTG GACAGgctct gactaccgag tgaatgggaa gtactaacga 002080 002081 gaactgtctg cttgggaact ccatgaagtt cgtggctttt gtgattgaaa tagcatcaat aaaaggttga cactgtggaa 002160 002161 caacacaagc ctgcatggac ctggttatct ctgacctcgc accactcatg aGACCATACC TGAGCCCTAC TCCACTTTGG 002240 002241 CAGAACTGTT GCATGGCCTC TCTTCATATA ATACCTCTCC GTACACCGTA CACCGCAGCT CAAAGAAAGG ATATATGCTC 002320 002321 CCTGTGAAGA CTAATGGAAC TGTCCCTCCT GATCCTCCTA CAGACTTCCT CTGGCCTAAT GGGTGCACCA TTGCATTATA 002400 002401 TCTGCCATCT ATACACACAT ATACCTTTCA ACCCTGCACT CTCTGAGATG ACTGGACTCA TGCCTAAATA ACTGATGCTG 002480 002481 TCCCTAGTGT AAGccaattc ttccaggaag tcttttcaaa gagagactgg acgaccttct ctctttctct ctccatcctg 002560 002561 ctgcttggga aagggatgtg acatctggag tcctggcagc cacCCTTGGA TCCTAAACAT TCTGGCTGTG GCTCTATGAC 002640 002641 TCCTTTCTCT TCTTGGTTTT GAATGTGGCT CTCCTAGCTG TACCTGAAGA GAGGCCCAAT CTGGCAGAAG TCCTAGAGAA 002720 002721 GGCTAGACAC ACAAATCACA CTTGGTAGGA GAACGGAGGC TGGTGCTGTG AGATGTAGGG AGTTCTGTTG CAGAGAGCCT 002800 002801 CTACAGTGTT AAGGGGAAGA AGGTATCCAA GCTGCTCCTC AGAGGTCAAC CAAAAGGTGC AAAGAGAGCT TCCATATGGG 002880 002881 CCCAGAATGG GCATGGGCAT GGCCAGTTTG ATAGGTGCAA GTAGGGACCA Tggaagctgc ctgacgagga gctgtacgga 002960 002961 aataagagta attcagtgat ggggtccaag catcctgaat ataagcggtc catgtcaaga aagagccaaa gggcgtcctc 003040 003041 aggacatgga agaggggcat tccaggctgg cagctgggga ggcccagaga gccctggaga agatctgaag tccattgcag 003120 003121 agctttcttt |
Predicted Small Protein
Name | NONHSAT041184_smProtein_2174:2326 |
Length | 51 |
Molecular weight | 5658.7261 |
Aromaticity | 0.06 |
Instability index | 48.298 |
Isoelectric point | 7.73846435547 |
Runs | 7 |
Runs residual | 0.0246783625731 |
Runs probability | 0.0305473540768 |
Amino acid sequence | MDLVISDLAPLMRPYLSPTPLWQNCCMASLHIIPLRTPYTAAQRKDICSL |
Secondary structure | LLEEELLLLLLLLLLLLLLLHHHHHHHHLLLLLLLLLLLLHHHHHHHHLL |
PRMN | - |
PiMo | - |