NONHSAT041253
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT041253 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1095 nt |
Genomic location |
chr15+:28895794..28908585 |
Exon number |
12 |
Exons |
28895794..28895845,28896551..28896602,28896637..28896733,28899420..28899601,28900641..28900839,28900942..28901117,28901278..28901333,28902027..28902077,28902333..28902362,28903769..28903820,28903827..28903912,28908524..28908585 |
Genome context |
|
Sequence |
000001 CCAGCCCCTG CACAGCCCTC AGCAGAGGAT TCGGACACAG AGGACGACTC TGAAGCCGAA CAAACTGAAA GGAACATTCA 000080
000081 CCCCACTGCA ATGATGTTTA CCAGGCTGGA GTTCATGCTG AGATCATGCA GAGTGAAGCC ACCAAGACTT TATGCGGACT 000160 000161 GCTGCAAATG TTAGTGGAAA GCGGAATGAC GGACAAGACA TCTTCTCCAA ACAGGCTGGT GTACAGGGAG CAACACCGGA 000240 000241 GCTGGTGCAC GCTGGGGTTT GTGCAGAGCA TCGCTCTCAC GCTGCAGGTG TGCGGCGCCC TCAGCTCCCT GCAGTGGATC 000320 000321 ACGCTGCTCA TGAAGGTCGT GGAAGGGCAC GCACCCTTCA CTGCCACCTC GCTGCAGAGG CAGAGTCCAT GCTGAGGTGG 000400 000401 CGCAGGGTGT GCCCGCAGGC CTCGCTGACT GCCACCCACA GCAGCACACT GGTGGAGGAG GTGGTGGCAC TGCTGCACAC 000480 000481 GCTGCACTCC CTGACTCAGT GGAATGGGCT CATCAACAAG TACATCAACT CCCAGCTCCG CTCCATCACC CACAGCTTTG 000560 000561 CGGGAAGGCC TTCCGAAGGG GTGCCCAGTT AGAGGACTAC TTCCCCGACT CCGAGAACCC TGAAGTGGGG GGCCTCATGG 000640 000641 CGGTCCTGGC TGTGGTTGGA GGCATCGATG GTCGCCTGCG CCTGGGTGGC CAAGTTGTGC ACGATGACTT TGGAGAAGTC 000720 000721 ACCATGACTC GCATCACCCT GAAGGGCAAA ATCACCGTGT TTGCCTTCCA GGAAGCTGTG TGAGCTTGTG CTTCTGTGGT 000800 000801 AAGCAGGGCC TGTCGAATAT ATACATGTTG TAGAAAACTT GAAGTATATA GAAAATATCT GAGAACTCCC TGCCGTGGCC 000880 000881 TTTAATGTGA ACAACGACAA GTGGACCTGG ACCTGCTGCG GTGCCAGCAG TTGAAGCTAT ACATCCTAGG TCGGGCGCTG 000960 000961 TTCTCCCACC AGGATAAACT GCGGCAGATC CTGTCTCAGC CAGCTGTTCA GGAGACTGGA AGTGTTCACA CAGATGATGG 001040 001041 AGCAGTGGTA TCACCTGACC TTGGGGACAT GTCTCCTGAA GGGCCGCAGC CCCCC |
Predicted Small Protein
Name | NONHSAT041253_smProtein_125:394 |
Length | 90 |
Molecular weight | 9844.3791 |
Aromaticity | 0.0561797752809 |
Instability index | 66.6629213483 |
Isoelectric point | 8.47625732422 |
Runs | 9 |
Runs residual | 0.0420797532496 |
Runs probability | 0.0503837170504 |
Amino acid sequence | MQSEATKTLCGLLQMLVESGMTDKTSSPNRLVYREQHRSWCTLGFVQSIALTLQVCGALS SLQWITLLMKVVEGHAPFTATSLQRQSPC |
Secondary structure | LLHHHHHHHHHHHHHHHHHLLLLLLLLLLLEEEEELLLLHHHHHHHHHHHHHHHHHHHHH HHHHHHHHHHHHHLLLLLLLLLHHHLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHH HHHHHHLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTT TTTTTTooooooooooooooooooooooo |