NONHSAT041575

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT041575

Source

NONCODE4.0

Same with

,

Classification

antisense,sense

Length

2019 nt

Genomic location

chr15+:34518713..34522350

Exon number

2

Exons

34518713..34520025,34521645..34522350

Genome context

Sequence
000001 ggatgcttag tttattttta gactgccatt actttttttc ttttcttttg agacagtctt gctgttgtcg ccgaggctgg 000080
000081 aatgcaatag cacgaccttg gctcactgca acctctgcct cccagggtca agcaattctc ctgcctcagc ctcccgagta 000160
000161 gctgggatta taggcaccca ccaccacgtc cagctaattt ttttgtattt ttagtagaga cggggtttca ccacgttggc 000240
000241 caggctggtc tgaaactcct gacctcaggt gatccaccaa gctcggcctc ccaaagtgct gggattacag gtgtgaggca 000320
000321 ccgcgcccgg ccACAttgcc attactttta atggcaacaa ccgcagttac ttttgcagca acctggtagt atgtatttaa 000400
000401 ggttataaat ttctcagaac tctagctgtg tcccacgagt tttaaaatgt ggtacttttg ctatcatata aatctatttt 000480
000481 ccattataat ttcttcatgt atcattgtta attcccaaac ataagagatt ttctagttac tataaaatta tttctagttt 000560
000561 aatatcattg tagtcaaaga atatgttttg tacaatttgc attctttgag attgacattt tcttcatggc tcagcgagtg 000640
000641 gtcagttttt gtgaatatct tgtttgaaaa gaatgtgaat tctgcaattg ttgagtgcag tgttacatgt cagttgggtt 000720
000721 aagtttgtta atgtcattca aatcttctat gtcttgattt gcctgctaat tctattattt ctggaactaa attagttcga 000800
000801 tggttctatt agttattgac tgaggtgtgc taatctccca ttatgtggat ttatctattt cttcAGTTGT AGATAGGACA 000880
000881 TTGATAGATA CATAAGTACC AGGACAAAAG CAGGGAGATC TTTTTTCCAA AATCAGGAGA AAAAAATGAC ATCTGGAAAA 000960
000961 CCTATAGGGA AAGGCATAAC AGATGGTAAG GATACTTTAT CTTGAGTAGG AGAGCCTTCC TGTGGCAACG TGGAGAAGGG 001040
001041 AAGAGGTCGT AGAATTGAGG AGTCAGCTCA GTTAGAAGCA GGGAGTTGGG AATTCCGTTC ATGTGATTTA GCATCAGTGA 001120
001121 TATGGCAAAT GTGGGACTAA GGGTAGTGAT CAGAGGGTTA AAATTGTGTG TTTTGTTTTA GCGCTGCTGG GACATCGCCT 001200
001201 TGGGTCCCCT CAAACAGATT CCCATGAATC TCTTCATCAT GTACATGGCA GGCAATACTA TCTCCATCTT CCCTACTATG 001280
001281 ATGGTGTGTA TGATGGCCTG GCGACCCATT CAGgcactca gcctctcaag tagctgggac tacaggtgtg caccccaatg 001360
001361 gctcgctaat ttttgtattt cttgtagaga cagggttttg ccatgttgcc caggctggtc ttgaactcct gggctcaagc 001440
001441 gatctgcctg ccttggcctc ccaaagtgtt tagctaagat tagctactgc gcctggccTG GAAGTTCTTT TTTAAGGATA 001520
001521 GGCAAAATAG AGCTTGTGGT TAAAGTATTA AGTAATTGAT TCAGGAAGTT ATTTTAACAC TCATTTGCCA CTCACCTATT 001600
001601 TATTCTTTCT TTCTTCTTTC AGAGAATGGA GTTCAGTGGT GGAGGACTGC TTTTGTGAAC ATGAGAAAGC AGCGCCTGGT 001680
001681 CCCTATGTAT TTGGGTCTTA TTTACATCCT TCTTTAAGCC CAGTGGCTCC TCAGCATACT CTTAAACTAA TCACTTATGT 001760
001761 TAAAAAGAAC CAAAAGACTC TTTTCTCCAT GGTGGGGTGA CAGGTCCTAG AAGGACAATG TGCATATTAC GACAAACACA 001840
001841 AAGAAACTAT ACCATAACCC AAGGCTGAAA ATAATGTAGA AAACTTTATT TTTGTTTCCA GTACAGAGCA AAACAACAAC 001920
001921 AAAAAAACAT AACTATGTAA ACAAGAGAAT AACTGCTGCT AAATCAAGAA CTGTTGCAGC ATCTCCTTTC AATAAATTAA 002000
002001 ATGGTTGAGA ACAATGCAT
[back to top]

Predicted Small Protein

Name NONHSAT041575_smProtein_1223:1423
Length 67
Molecular weight 7618.0909
Aromaticity 0.136363636364
Instability index 50.2272727273
Isoelectric point 8.30462646484
Runs 10
Runs residual 0.000907276356379
Runs probability 0.0693958664549
Amino acid sequence MNLFIMYMAGNTISIFPTMMVCMMAWRPIQALSLSSSWDYRCAPQWLANFCISCRDRVLP
CCPGWS
Secondary structure LLEEEEELLLLLEEHHHHHHHHHHHHLHHHHHLLLLLLLLLLLHHHHHHHHHHHLLLLLL
LLLLLL
PRMN LLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
LLLLLL
PiMo oooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiii