NONHSAT041575
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT041575 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense,sense |
Length |
2019 nt |
Genomic location |
chr15+:34518713..34522350 |
Exon number |
2 |
Exons |
34518713..34520025,34521645..34522350 |
Genome context |
|
Sequence |
000001 ggatgcttag tttattttta gactgccatt actttttttc ttttcttttg agacagtctt gctgttgtcg ccgaggctgg 000080
000081 aatgcaatag cacgaccttg gctcactgca acctctgcct cccagggtca agcaattctc ctgcctcagc ctcccgagta 000160 000161 gctgggatta taggcaccca ccaccacgtc cagctaattt ttttgtattt ttagtagaga cggggtttca ccacgttggc 000240 000241 caggctggtc tgaaactcct gacctcaggt gatccaccaa gctcggcctc ccaaagtgct gggattacag gtgtgaggca 000320 000321 ccgcgcccgg ccACAttgcc attactttta atggcaacaa ccgcagttac ttttgcagca acctggtagt atgtatttaa 000400 000401 ggttataaat ttctcagaac tctagctgtg tcccacgagt tttaaaatgt ggtacttttg ctatcatata aatctatttt 000480 000481 ccattataat ttcttcatgt atcattgtta attcccaaac ataagagatt ttctagttac tataaaatta tttctagttt 000560 000561 aatatcattg tagtcaaaga atatgttttg tacaatttgc attctttgag attgacattt tcttcatggc tcagcgagtg 000640 000641 gtcagttttt gtgaatatct tgtttgaaaa gaatgtgaat tctgcaattg ttgagtgcag tgttacatgt cagttgggtt 000720 000721 aagtttgtta atgtcattca aatcttctat gtcttgattt gcctgctaat tctattattt ctggaactaa attagttcga 000800 000801 tggttctatt agttattgac tgaggtgtgc taatctccca ttatgtggat ttatctattt cttcAGTTGT AGATAGGACA 000880 000881 TTGATAGATA CATAAGTACC AGGACAAAAG CAGGGAGATC TTTTTTCCAA AATCAGGAGA AAAAAATGAC ATCTGGAAAA 000960 000961 CCTATAGGGA AAGGCATAAC AGATGGTAAG GATACTTTAT CTTGAGTAGG AGAGCCTTCC TGTGGCAACG TGGAGAAGGG 001040 001041 AAGAGGTCGT AGAATTGAGG AGTCAGCTCA GTTAGAAGCA GGGAGTTGGG AATTCCGTTC ATGTGATTTA GCATCAGTGA 001120 001121 TATGGCAAAT GTGGGACTAA GGGTAGTGAT CAGAGGGTTA AAATTGTGTG TTTTGTTTTA GCGCTGCTGG GACATCGCCT 001200 001201 TGGGTCCCCT CAAACAGATT CCCATGAATC TCTTCATCAT GTACATGGCA GGCAATACTA TCTCCATCTT CCCTACTATG 001280 001281 ATGGTGTGTA TGATGGCCTG GCGACCCATT CAGgcactca gcctctcaag tagctgggac tacaggtgtg caccccaatg 001360 001361 gctcgctaat ttttgtattt cttgtagaga cagggttttg ccatgttgcc caggctggtc ttgaactcct gggctcaagc 001440 001441 gatctgcctg ccttggcctc ccaaagtgtt tagctaagat tagctactgc gcctggccTG GAAGTTCTTT TTTAAGGATA 001520 001521 GGCAAAATAG AGCTTGTGGT TAAAGTATTA AGTAATTGAT TCAGGAAGTT ATTTTAACAC TCATTTGCCA CTCACCTATT 001600 001601 TATTCTTTCT TTCTTCTTTC AGAGAATGGA GTTCAGTGGT GGAGGACTGC TTTTGTGAAC ATGAGAAAGC AGCGCCTGGT 001680 001681 CCCTATGTAT TTGGGTCTTA TTTACATCCT TCTTTAAGCC CAGTGGCTCC TCAGCATACT CTTAAACTAA TCACTTATGT 001760 001761 TAAAAAGAAC CAAAAGACTC TTTTCTCCAT GGTGGGGTGA CAGGTCCTAG AAGGACAATG TGCATATTAC GACAAACACA 001840 001841 AAGAAACTAT ACCATAACCC AAGGCTGAAA ATAATGTAGA AAACTTTATT TTTGTTTCCA GTACAGAGCA AAACAACAAC 001920 001921 AAAAAAACAT AACTATGTAA ACAAGAGAAT AACTGCTGCT AAATCAAGAA CTGTTGCAGC ATCTCCTTTC AATAAATTAA 002000 002001 ATGGTTGAGA ACAATGCAT |
Predicted Small Protein
Name | NONHSAT041575_smProtein_1223:1423 |
Length | 67 |
Molecular weight | 7618.0909 |
Aromaticity | 0.136363636364 |
Instability index | 50.2272727273 |
Isoelectric point | 8.30462646484 |
Runs | 10 |
Runs residual | 0.000907276356379 |
Runs probability | 0.0693958664549 |
Amino acid sequence | MNLFIMYMAGNTISIFPTMMVCMMAWRPIQALSLSSSWDYRCAPQWLANFCISCRDRVLP CCPGWS |
Secondary structure | LLEEEEELLLLLEEHHHHHHHHHHHHLHHHHHLLLLLLLLLLLHHHHHHHHHHHLLLLLL LLLLLL |
PRMN | LLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL LLLLLL |
PiMo | oooooooTTTTTTTTTTTTTTTTTTiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii iiiiii |