NONHSAT041761

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT041761

Source

NONCODE4.0

Same with

,

Classification

sense

Length

2154 nt

Genomic location

chr15+:39877836..39880817

Exon number

3

Exons

39877836..39879721,39880243..39880419,39880727..39880817

Genome context

Sequence
000001 CACAACACTG GAACCCCACC CCCATCTCCA TCATGCTTCC ATTCAGTTTC TTGCTGCAGC AGCTGGTTAA CTGACAGCTT 000080
000081 ATCTGCTGTA CAGAGCCAAA ACTCCATTAT GAGTACATCG TAATTACCCA TCTGGATTGC AGTAATGGCA GTGAAGATCT 000160
000161 TGGTATAGCT CATTAATTCT GATTTTTTGC TTTGAGGAAA AGAGATGAAG ACGTGGCAGC AACAGCTCTA AGTTGACTGC 000240
000241 TTTTAGAATT TGACCTTAGT GGCACAGAGT TAAGAAAAAT CTGCTCACCA GAGATATTGA CAGGCTTACT GTGTAAGCAT 000320
000321 TGGCCTGATC GGGCCTGGAA GTTTTGCCCC TTTCATCTGT AGGGATAAGA GGGCCTAAGA GAATAGCAGC AATCTGAGCT 000400
000401 CTAGAGCACC AAAAGAAATA AGGCACGATA TCGTTCCATG GCACGTTATC CCTGGCTTTT GTTACCAGTA AAATGAATGA 000480
000481 CTTTGCTGAG ACAATACTTA GTGTAGCAGG TACAAGTTAT AAAAGTGATT CATTACAACT AAGATAAGGA AGAAAACAGG 000560
000561 AAAACAGCAC TTGCCCTTca cacacacaga aacacacatg cacacacaca caaacacacC CTTGTCACAG CTCAGAATAA 000640
000641 CCAATTCCAT CCAGGGATCA TATTAGCGAT ATTGGCACTG TAATGGTCGT TTTTACATTT ATTTTCTGTT CCGCATTCAC 000720
000721 TTAACATGTG CGTTAAAAGG AACAAAGCTA GCTGGAGGTA GCAAAGTTTT GAACTTGAAT CAGGGATTGC TAAGAAAACT 000800
000801 TACAACTAAT GACCACAGAA AGTAAGTTCT TTGTCTTCTG TCTGATACAG CTAGATGTGA TTGTAGCCGT GGTGCCTGGG 000880
000881 CAGATGGTAA ACAAACATGC TGTCCTCTTA TGACAATATG TGCAGAGAAG GCCCCAAACG CTGGGGTGAG AGGAACAACA 000960
000961 AACTGACTAA CTCACGGCCG AGTTGGAGCC AGAACCAACA ACAGCTCGGC TGCCTTCACA CTCATCTGTC AAACACATGG 001040
001041 TGTATGGCTC CCCTGACAGA AATGACTCCT ATAAGCTTCC TCATACTCGC GCATTCTTGG AAGTCTGAGA CTGGAAATGC 001120
001121 CTACCCAGAT ATGTTAAGTC AGTAAAGGAA AACTCATTTG CAATGCTGAG AGGAGAAAGA AAATCAATGA ATAGGAGAGC 001200
001201 ATACACTGTG GGAAGGCTCA GCTGTACTGA GCCAGGCAAA GCATCCGATT ACCCCACTGC TGTACACATC ATGACCTGGG 001280
001281 ATAAACCCCT GGGCCGTTGG CCTAAGAAAT ATGTTGCTTT TCATCCTGTA TAACTGCAAC TTTGTGCCGG CTCATATTAT 001360
001361 gttctagaga gctcatgtac accatggtga ccatagttaa taatactgga ttgtatgctt aaaatttgct aagagagtag 001440
001441 atcttaagtc atcaccaaaa aaagtaactg taagatgatg gagatgtgtt aattagcttg acggtggtaa tcacaatata 001520
001521 tgtgtatatc aaaacatcac attatacacc ttaaatgtat ataatatttg tcaattatac ctcagtaaag ccaaaaagaA 001600
001601 ATAAATATAT TGCTTTTCAC CCTCTGGCAA GTGGAGGGCC CTGAACAGAG CCCTCTAAAG AACAGCTTGT CCTAATCATC 001680
001681 ACGTACCTGA TGAACCTCTG TTTCCCCTGC AGCCAGCGAC TCTGCGGACG ATGGCTGGTC TCCATGGTCC GAGTGGACCT 001760
001761 CCTGTTCTAC GAGCTGTGGC AATGGAATTC AGCAGCGCGG CCGCTCCTGC GATAGCCTCA ACAACCGATG TGAGGGCTCC 001840
001841 TCGGTCCAGA CACGGACCTG CCACATTCAG GAGTGTGACA AGAGATTTAA ACAGGATGGT GGCTGGAGCC ACTGGTCCCC 001920
001921 GTGGTCATCT TGTTCTGTGA CATGTGGTGA TGGTGTGATC ACAAGGATCC GGCTCTGCAA CTCTCCCAGC CCCCAGATGA 002000
002001 ACGGGAAACC CTGTGAAGGC GAAGCGCGGG AGACCAAAGC CTGCAAGAAA GACGCCTGCC CCATCAATGG AGGCTGGGGT 002080
002081 CCTTGGTCAC CATGGGACAT CTGTTCTGTC ACCTGTGGAG GAGGGGTACA GAAACGTAGT CGTCTCTGCA ACAA
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Predicted Small Protein

Name NONHSAT041761_smProtein_896:1144
Length 83
Molecular weight 9457.6013
Aromaticity 0.0853658536585
Instability index 51.5024390244
Isoelectric point 7.76885986328
Runs 10
Runs residual 0.0139504804139
Runs probability 0.037440381558
Amino acid sequence MLSSYDNMCREGPKRWGERNNKLTNSRPSWSQNQQQLGCLHTHLSNTWCMAPLTEMTPIS
FLILAHSWKSETGNAYPDMLSQ
Secondary structure LLLLLLLHHHLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHLLLLLLLLLLLLLLLLHH
HHEEEELEELLLLLLLLLLLLL
PRMN -
PiMo -