NONHSAT041761
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT041761 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2154 nt |
Genomic location |
chr15+:39877836..39880817 |
Exon number |
3 |
Exons |
39877836..39879721,39880243..39880419,39880727..39880817 |
Genome context |
|
Sequence |
000001 CACAACACTG GAACCCCACC CCCATCTCCA TCATGCTTCC ATTCAGTTTC TTGCTGCAGC AGCTGGTTAA CTGACAGCTT 000080
000081 ATCTGCTGTA CAGAGCCAAA ACTCCATTAT GAGTACATCG TAATTACCCA TCTGGATTGC AGTAATGGCA GTGAAGATCT 000160 000161 TGGTATAGCT CATTAATTCT GATTTTTTGC TTTGAGGAAA AGAGATGAAG ACGTGGCAGC AACAGCTCTA AGTTGACTGC 000240 000241 TTTTAGAATT TGACCTTAGT GGCACAGAGT TAAGAAAAAT CTGCTCACCA GAGATATTGA CAGGCTTACT GTGTAAGCAT 000320 000321 TGGCCTGATC GGGCCTGGAA GTTTTGCCCC TTTCATCTGT AGGGATAAGA GGGCCTAAGA GAATAGCAGC AATCTGAGCT 000400 000401 CTAGAGCACC AAAAGAAATA AGGCACGATA TCGTTCCATG GCACGTTATC CCTGGCTTTT GTTACCAGTA AAATGAATGA 000480 000481 CTTTGCTGAG ACAATACTTA GTGTAGCAGG TACAAGTTAT AAAAGTGATT CATTACAACT AAGATAAGGA AGAAAACAGG 000560 000561 AAAACAGCAC TTGCCCTTca cacacacaga aacacacatg cacacacaca caaacacacC CTTGTCACAG CTCAGAATAA 000640 000641 CCAATTCCAT CCAGGGATCA TATTAGCGAT ATTGGCACTG TAATGGTCGT TTTTACATTT ATTTTCTGTT CCGCATTCAC 000720 000721 TTAACATGTG CGTTAAAAGG AACAAAGCTA GCTGGAGGTA GCAAAGTTTT GAACTTGAAT CAGGGATTGC TAAGAAAACT 000800 000801 TACAACTAAT GACCACAGAA AGTAAGTTCT TTGTCTTCTG TCTGATACAG CTAGATGTGA TTGTAGCCGT GGTGCCTGGG 000880 000881 CAGATGGTAA ACAAACATGC TGTCCTCTTA TGACAATATG TGCAGAGAAG GCCCCAAACG CTGGGGTGAG AGGAACAACA 000960 000961 AACTGACTAA CTCACGGCCG AGTTGGAGCC AGAACCAACA ACAGCTCGGC TGCCTTCACA CTCATCTGTC AAACACATGG 001040 001041 TGTATGGCTC CCCTGACAGA AATGACTCCT ATAAGCTTCC TCATACTCGC GCATTCTTGG AAGTCTGAGA CTGGAAATGC 001120 001121 CTACCCAGAT ATGTTAAGTC AGTAAAGGAA AACTCATTTG CAATGCTGAG AGGAGAAAGA AAATCAATGA ATAGGAGAGC 001200 001201 ATACACTGTG GGAAGGCTCA GCTGTACTGA GCCAGGCAAA GCATCCGATT ACCCCACTGC TGTACACATC ATGACCTGGG 001280 001281 ATAAACCCCT GGGCCGTTGG CCTAAGAAAT ATGTTGCTTT TCATCCTGTA TAACTGCAAC TTTGTGCCGG CTCATATTAT 001360 001361 gttctagaga gctcatgtac accatggtga ccatagttaa taatactgga ttgtatgctt aaaatttgct aagagagtag 001440 001441 atcttaagtc atcaccaaaa aaagtaactg taagatgatg gagatgtgtt aattagcttg acggtggtaa tcacaatata 001520 001521 tgtgtatatc aaaacatcac attatacacc ttaaatgtat ataatatttg tcaattatac ctcagtaaag ccaaaaagaA 001600 001601 ATAAATATAT TGCTTTTCAC CCTCTGGCAA GTGGAGGGCC CTGAACAGAG CCCTCTAAAG AACAGCTTGT CCTAATCATC 001680 001681 ACGTACCTGA TGAACCTCTG TTTCCCCTGC AGCCAGCGAC TCTGCGGACG ATGGCTGGTC TCCATGGTCC GAGTGGACCT 001760 001761 CCTGTTCTAC GAGCTGTGGC AATGGAATTC AGCAGCGCGG CCGCTCCTGC GATAGCCTCA ACAACCGATG TGAGGGCTCC 001840 001841 TCGGTCCAGA CACGGACCTG CCACATTCAG GAGTGTGACA AGAGATTTAA ACAGGATGGT GGCTGGAGCC ACTGGTCCCC 001920 001921 GTGGTCATCT TGTTCTGTGA CATGTGGTGA TGGTGTGATC ACAAGGATCC GGCTCTGCAA CTCTCCCAGC CCCCAGATGA 002000 002001 ACGGGAAACC CTGTGAAGGC GAAGCGCGGG AGACCAAAGC CTGCAAGAAA GACGCCTGCC CCATCAATGG AGGCTGGGGT 002080 002081 CCTTGGTCAC CATGGGACAT CTGTTCTGTC ACCTGTGGAG GAGGGGTACA GAAACGTAGT CGTCTCTGCA ACAA |
Predicted Small Protein
Name | NONHSAT041761_smProtein_896:1144 |
Length | 83 |
Molecular weight | 9457.6013 |
Aromaticity | 0.0853658536585 |
Instability index | 51.5024390244 |
Isoelectric point | 7.76885986328 |
Runs | 10 |
Runs residual | 0.0139504804139 |
Runs probability | 0.037440381558 |
Amino acid sequence | MLSSYDNMCREGPKRWGERNNKLTNSRPSWSQNQQQLGCLHTHLSNTWCMAPLTEMTPIS FLILAHSWKSETGNAYPDMLSQ |
Secondary structure | LLLLLLLHHHLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHLLLLLLLLLLLLLLLLHH HHEEEELEELLLLLLLLLLLLL |
PRMN | - |
PiMo | - |