NONHSAT042016
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT042016 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
647 nt |
Genomic location |
chr15+:42787832..42797886 |
Exon number |
2 |
Exons |
42787832..42787911,42797320..42797886 |
Genome context |
|
Sequence |
000001 AGGCGCGACT AGGGTGCAGC GCCAGGTCCG GTGTTGGGGT GTCCGAGTTG CCGCCGGAGA GGAGTGGCCT CGCCCGCTTG 000080
000081 acagtcttgc tctgttgccc aggctggagt gcagtgagtc ttggctcact gcagcctctg cctcccaggc tcaagccaca 000160 000161 gacgtgcact actgcactcg gctaattttt gtgttttctt tttagtagag ctggggtttc accgtattgg gcagtctggt 000240 000241 cttgaactac tggcctcaag tgatccgccc acctctgcct cccacagtgc tgggattaca ggcatgagcc accacgcctg 000320 000321 gccTGATGGT GATTTAAAGT GCTCTTTCTT CATTACTTCT TGAGTAGCTC ACCAGTTTTA CAAATGAAGC CACATGGATC 000400 000401 TTCCAAGGCC TTATTTAAAT TCCAGGGCCT TTTTTCTGTG TATTTCTTTC CAAGAAGCTC Atttactttt cctttcttct 000480 000481 tttcttctct tttcttttac ttcctttCTG CTTGCAtttt tttttttttt ttttgagacg gagtcttgct gttgcccagg 000560 000561 ctgaagtaca gtggcatgat ctcggctcac tgcgaccttt gcctctcggg ttcaatcaac tctcctgtct cagcctcctg 000640 000641 agtagct |
Predicted Small Protein
Name | NONHSAT042016_smProtein_383:535 |
Length | 51 |
Molecular weight | 6044.0454 |
Aromaticity | 0.4 |
Instability index | 49.8722 |
Isoelectric point | 9.86492919922 |
Runs | 9 |
Runs residual | 0.0153216374269 |
Runs probability | 0.0335433472688 |
Amino acid sequence | MKPHGSSKALFKFQGLFSVYFFPRSSFTFPFFFSSLFFYFLSACIFFFFF |
Secondary structure | LLLLLLHHHHHHHLLLEEEEEELLLLEELHHHHHHHHHHHHHHHHHHHHL |
PRMN | LLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTTTTToooooo |