NONHSAT042265
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT042265 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1923 nt |
Genomic location |
chr15+:45803334..45848928 |
Exon number |
6 |
Exons |
45803334..45803403,45804571..45804647,45805896..45806161,45807971..45808090,45813075..45813223,45847688..45848928 |
Genome context |
|
Sequence |
000001 ACCTAAGCGA TGAAATCCAA AGGTGAATCT TTTGGTTGGT GATTTTGATG ATAGCCACAA AGCAAGCAGG gtaatgctga 000080
000081 tgcttcaagt cttggaacca cacttcgaga atcactgTTA TAATGTACAG CAGAACTGCA TGATCAGctg tatggtagcc 000160 000161 ttgaaaacca acaggccaca atcacagtga aaacctcagg ttggcagcca ctggaggata caaaatgagt ttggatctcc 000240 000241 ttcaatgccc cattcccaga gaactgtcat tatttgacct gctggtagtt ccctaaagga cgtgcaagga tgtttttatt 000320 000321 tgactggaca cttgaagctt gccctgtatg aacagccccc atcttcccat gcttgtcaaa aatcagaggc aactaacact 000400 000401 gcggcttcct gagagtctca ctctgtcacc caggctggag agcaattgca caaacacttg gctcactgca gcctcaactt 000480 000481 cttgtcctca agtgatcctc ccaccttagc ctcctaagta gctgggacca cagtgaggtc aaaaaatgtt tgaaagccac 000560 000561 tgagatagaa ggaccagcca ctttgaacgc cttagaggca aaaagagctt tgtgagttgt aagaggaaaa agaagaccag 000640 000641 catggctgaa gcgagccctg gggaggagtg ttatgaaaga agATGAGTCT GGAAGTGTTA GTTGCAAAGA TATGCATTTA 000720 000721 CTTCTCTGGC TACAAAAAAG AATAGAAATG CACAAAGCAG AGCAGTGTGA AGAAGAAGAG GCGATGACCC CTAGACCGAC 000800 000801 CAAAGCCCGT GCTCCACTGC CCAGTGCCTA TGTCCCACCA CTGTCGCTGC CACCCTGCCC GAGAGAAAGG CTGAAGGGGA 000880 000881 TGCTAAAGGA GATAAAACCA AGGTTAAGTA GGAACTGCAG AGAAGATCCA CAAGGTTGTC TGCTAAACCT GCTCCTCCAA 000960 000961 AGCCACAGCC GAAGCCCAGA AAGGCCTCTG CAAAGAAGAG AGAGAAGGTA CCTACAGAGA AGAAGGGAAA AGCTGATGCT 001040 001041 GGCAAGGAGG GGAATAACCC TGCAGAAAAT GGAGATGCCA AAACAGACTA GGCACAGAAA GCTAAAGGTG CTGGAGATGC 001120 001121 CAAGTGAAGT GTGTGCATTT TTGATAACTG TGTACTTCTG GTGACTGTAC AGTTTGAAAT ACTATTTTTT AATCAAGTTT 001200 001201 TATAAAAATG CAGATTTTGT TTAGCTTTTT TTTTTTTTTT TAAGCTATGT TAGTACACAG AATACTTCAT TGTTGTTTTG 001280 001281 GGGAGAAGGG CCATATGTCA CTAATAGAAA GCCCCTGAAG CTGGACTGAT GTGGGGAAAA CACCTTTTCC TTCTGGTTTT 001360 001361 GAGAGACTTC CTCTTGGGTC CCAGGAAGAG GGATTCCCTG ACTTTGATAC ACATGGCCAC CTTGGTATAA AAGCCTTGTG 001440 001441 GTATGGAAAA ACAAATTCGT TTTTTATGTC CTCTTCTCTG TTTCTACCTT TCAGAATGGA CTTAAATCCC TTAAACCCAG 001520 001521 ACATCTTCTG GGACCTGACC CCCAATAATT GGTTACCAGT GTGTCAGGCA ATCTGGACTT TGCCCTCAAA AGAGCAGTGG 001600 001601 TTCCTGTTTC TAGGTTGTGG ATCTTCAGAT AAATTCTGTC ATTTTCCTTT CACTTCCTGA AAGCCAGGGT CGGTTCATGA 001680 001681 AAAGCTATGA AACAGCATGC TAAATGTGAA ATGTCAACCC TCACTAAACT TTGCCGGTTC AGAGCATCAG ATGAAGACTT 001760 001761 CATTGGGTTT TACAGTGGCT TTCTGATTTT TGGTAGTCCA TTGAAGAAGG GAGTTTGAAA GTTGTTGTAT ACTGTTAACG 001840 001841 ATTGTCTGCC CATGTCCTGC CCAAAATACC ATGATTCTTT ATGGAAATTA TCTTTAATAA AGCTGGATAC AGTTTGGCTT 001920 001921 GGG |
Predicted Small Protein
Name | NONHSAT042265_smProtein_347:508 |
Length | 54 |
Molecular weight | 5899.8427 |
Aromaticity | 0.0188679245283 |
Instability index | 70.2245283019 |
Isoelectric point | 8.93902587891 |
Runs | 9 |
Runs residual | 0.00954901058444 |
Runs probability | 0.0488233331371 |
Amino acid sequence | MNSPHLPMLVKNQRQLTLRLPESLTLSPRLESNCTNTWLTAASTSCPQVILPP |
Secondary structure | LLLLLLLHHHHLHHHHHHLLLLLLLLLLLLLLLLLLEEEEELLLLLLEEEELL |
PRMN | - |
PiMo | - |