NONHSAT043873
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT043873 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1954 nt |
Genomic location |
chr15-:51859240..51914967 |
Exon number |
3 |
Exons |
51859240..51860755,51868253..51868378,51914656..51914967 |
Genome context |
|
Sequence |
000001 TTTCCGCAGC TGAGCGGCGA CCCGGGCGGC GGCGGCGGTC GAGGAGCTCC CATGGCAGGG ACGAGGCGGA GGGAAGGCGA 000080
000081 AAGGGGGGCG AGGAGTTAAG CCAGAGCCTC CGCGGGGCGG GTTTCCGAGG GAGGCACAGA GGGAAACGGC TCTCGCAGCC 000160 000161 CGAGGAGGGT CAGGCGCGGA GCTTGTCGCA CCTCCCGCGC ATTCTGTCCA GCCCGGGCTC CGGAGATGCA TCTGCATCAG 000240 000241 GTCCTCACCG GAGCTGTCAA CCCTGGAGAC AACTGCTACT CCGTGGGCAG CGTCGGGGAT GTCCCCTTCA CGGCATATGG 000320 000321 ATCAGGCTGT GATATTGTTA TTTTGGCAAA TGACTTTGAA TGTGTACAGA TCATTCCTGG TGCTAAGCAT GGAAACATCC 000400 000401 AAGTCAGCTG TGTGGAGTGT TCTAACCAAC AAGGAAGAAT TGCAGCTTCA TATGGTAATG CTGTTTGTAT ATTTGAGCCC 000480 000481 TTGGGCATAA ATTCTCATAA AAGAAATTGT GTAAGTATTA ACCAATAATA GAATACTTTT AGAATCTAGT TAACTTTAGA 000560 000561 ATCCAATTGA TGTTAATAAA AAGCTCCTTA GGAGCTAGTG CTGAAAATAG ACTAGAGTAT CAGTGAAAAA TTGGTCTAGT 000640 000641 GCTTTATGTT AGGATCCTTA CATTCACTAC GGATACATCC CTAGTGCTTT TAGAAACCCA AGTCTCTAGA ATATTGCAAA 000720 000721 TTGACATTTA CTGTGTTAAC TGAGATctac cctagtttga actactgtta tttcttgtct ggattactaa tatctatctg 000800 000801 atatctggtt tcctgctgcc ttcagcccca gtgtctgttc tcaacagagg agatcatgac atttctctgc ttaaaacttt 000880 000881 gtaatggttc catatttctc tctctttttt cttttgtttt gagacagggt cgcactgtat cccctgggct ggagtgcagt 000960 000961 ggcatgatca ctgctcactg cagcctcaac ctgtcaaatg gtcctcccac ctcaacctcc caagtagttg cgactatagg 001040 001041 catgtaccac catggccagc taatttttaa atttttcgta gagatggagt ttccctgtgt tgctcaggct ggtcttgaac 001120 001121 tctggggcta agtgatcctc ccacttcagc ctcccaaatt gctggaatta tgggcatgag ccaccatgcc cagctgctcc 001200 001201 atatttcttt cagataaaaa gccaaaagcc ttttgtagac tacaacttcc cttctactca gtagcacagt tactatgtct 001280 001281 cagagctcac ctcgtaagtt cttgtcctct ctggttctac tctggccaca ttggcatttt tactgtttct cagttaacct 001360 001361 tccctctttg agcctttgtg ttgtttgttt tctttgtcag gaatgttttt cctccagcta tctccaagga tagctcccat 001440 001441 agatccttta ggtctttgct cactaatacc ttgtcaatga ggtttacctt gaccaccctt taaaaaattg tacccccact 001520 001521 tatcttgcta tttaaaaatt tttttacagc atttatttat ttattgttta ctatgtaaaa tgttatctaa aggtacataa 001600 001601 gggtaggaag cttttttcac tgatgagtcc ccagtactta gaacagtatc tggaacagcc aggtgtggtg gctcacacct 001680 001681 gtaatcccaa cactttggga ggctgaggcg ggtggaacac gaggtcaggg gtttgagatc agcctggcca acatggtgaa 001760 001761 accccgtgtc tactaaaaat aaaaaaatta tccaggtgtg gtggcacgtg cctatagtcc ctgctgctag gaaggctgag 001840 001841 gcaggagaat cgcttgaacc caggaggtgg aggttgcagt gatcctggac tgcaccattg cactccagct tgggagtcag 001920 001921 agcaagactc catctcaaaa aaaaaaaaaa aaaa |
Predicted Small Protein
Name | NONHSAT043873_smProtein_1274:1432 |
Length | 53 |
Molecular weight | 6006.9914 |
Aromaticity | 0.173076923077 |
Instability index | 87.9867307692 |
Isoelectric point | 7.64825439453 |
Runs | 8 |
Runs residual | 0.00347674923946 |
Runs probability | 0.118530295001 |
Amino acid sequence | MSQSSPRKFLSSLVLLWPHWHFYCFSVNLPSLSLCVVCFLCQECFSSSYLQG |
Secondary structure | LLLLLHHHHHHHHHHHLLLLEEEEEEELLLLLLEEEEEEEHHHHHLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTTTTooooooooooooo |