NONHSAT044219
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT044219 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2712 nt |
Genomic location |
chr15-:60780483..60783123 |
Exon number |
1 |
Exons |
60780483..60783123 |
Genome context |
|
Sequence |
000001 AGCTACAACA TATTTTCCCA CTTTAAATAA TATTTAACAT ATGACAAACC CCAGACAAGG CTTTTAATAT GTATAAAGAA 000080
000081 CTGCAGTGTT AGGTGGTTTA TTTGCAAACT GTTTTCAGTG TTGTCCATTT TTATGGCACC TTTAACAATA TTCTTGTTTC 000160 000161 CAAAGTACAA AAAAAATAGG TTAAATAATC TAGCCATAAC TGAATGTCAA GCAATAAAAC AAATGACTTT TGTGCATAGA 000240 000241 CTTAAAAAAT ACAAATTTTA GACATCTGCA TGTAAATGCA ATCTCTTGTT TACTGCTTTC TTCAACTTGA GCAATCGATT 000320 000321 CCTTATTTAC TATTAACTTA AGAACTTGTA ACGGCCTGTA AACATTTTCT CTCTTACTCT TCTTTCAAAT TTACCTGTCC 000400 000401 CTGCTTTTGA GTCATAATAT TTAATGTTGT TCTGCACATC TCTATACAGT TAACTTTTTG GCTTTCATTC TGTATAGATA 000480 000481 AGAAAATGTT ATATTATAAA CAGCCTACTC AGTGCAAATA TTTATCTGTT TATCAAATCC ACAATATGCT GTATAATACC 000560 000561 GGTTTTACTA TATAATCTAT TTTAGACATA GCTGTTTAGA ACTAGAGTGT GCTATTTTTG TGTTTTTCTG ATGTGTGGTG 000640 000641 CTAGACAAGT TACTTTTGTG AACAACAAAA ATTATCCCTT TTATTCCTAG ACAATACCAC CTTTGGGTCT TGTTAATTTC 000720 000721 ACTGAGTATA ACTATATATT TGTATATATA TACATATATA TATATATCTA CCTATGCCCA ACTGGCAGCT GTATCAGAGT 000800 000801 GCTGGATTTG GGACATGCTT TTCTCTTTAA ATACATAATA TCATTATATA AATTATTCTA GAGTGTATTT AATTAGGATA 000880 000881 AAATTACTTC CTTAGTATGG ATATTTGACA TCTATAGGGT GAATTTGTTT ATAAATATGG CTATATGGAA ACTTATTAGC 000960 000961 ATTTACTTTA TGTTTGCTAC TTGGCTTTAC AGCATATCTC CTAAGCTGAA AAATAATTTG CCAGGCCTTC AAGATCCTAA 001040 001041 AGAAACTTGT TTAATGGAGT AATATACTTT TTTTTCTTAT TAAGGAATTG TATTACTGGC ACCTAACACA GTTGTATTCT 001120 001121 TAGCTCCTAT TATAGATAAT GGGCATTTAC ATAAAATATC CTAGATGGCT TGATGGCAGA ATAAACCTTT CCCCTCCTAC 001200 001201 CTGAGTCATG AGAAGGATGG AGACGTCCTC TGCCATAACA TGGGCCATAA AGCAAATTCG ACATGGGATG TTCTGTTTCA 001280 001281 GTATGACCTC AACCAGTTCC ATGAACTGAG TGAAGGACCT TCATTTTCAA AGTTATTTAA TAAGTAGCTT AATTAAGCCT 001360 001361 TTCTACCCAT TCTCCCAAGA TCTATTGGCA TTATTGAAAA GCAAAGTTTA TCAAATATCT AACTAAGGAT GTAGTTAACC 001440 001441 TTATTAAATA TTGATTAGAA TTGTTCTGTA ATATTACTGA ATTTGTAAGA TCTTTAGCAA AGATTTTTGA GCAATTTATA 001520 001521 AATGTAGAGC AAATGTTTCT GTTTACTGCA CTTTTTGTAA CTGAAGGTGA TAAATTCTCA AGCCATGATT ATTGGCTTCC 001600 001601 ATGCACTGCA GTATTTATCC ACAATTCTAG ACATTTTCCA TTTTTGTGGA AGAGTTGCTG TTACCTTAAT TATAAATGCA 001680 001681 ATTGTGTGGT TAATGAGAGC TAATGCCAGT AGTTAACCTT TTAAAGTGGA TTGGCTACAG TTGAGGGAGA AATCTCTTTT 001760 001761 AATATAAATC ACATCATTCC TTAACTGCCT CTCTTGGAAA GAGATTGAAA CCTTTTTTTA AAGCACGATT TAGCATCCTA 001840 001841 AGCTTCCTGA GGGTAGAGAT TGTATCTTTT TGCGTCTGCA CAATGGCTAG CACATGTCAG CATTTGACAA TTGTTAAATG 001920 001921 ATAACAAGTG TGCCCCAATT AAGACGTTTT TCCTGGGTTG TTTTGTTAAA TTTACAAAGT AAGCCAAGCC TTACGGTTAA 002000 002001 CATTCTCCTC TACAACCAAG TATTAAAGCC ACATTTAAAA AGACCACATG AAATGCTGAT TCTAATTGTG TGTAGGTCTT 002080 002081 GAGGATTAAG CACACAAATT TCACAAACTT CTGTTTGAGT AAACAAACTC AGCCTTCTGT AAATATACAT GCAAGTTTGG 002160 002161 AAACAGTAAT ACTGTACCTA TAAATATATG CTGTCTGTTT TGTGTACAGT ATGTAAAAAC TCCTTTTCTG CCACACTAAA 002240 002241 AATGCAAGCC ATTTATGGGA ATCCTAAAAC TAGTATTGAA CTAAAACTTT GCTAATGATC TTTATTAGAG GATCGTCCAA 002320 002321 CTTTTCACTT ACCTTGGGTT TTCTTTTCAA TTCACTCTTA CACTAGTCTG CTTATTTCCA GCTGTTTATT TTATTGAGTC 002400 002401 CTGAATTTAA AAAAAAAATA TTTTGATTCA TTTTGTAAAT ACAAGCTGTA CAAAAAAGAG AGATTTAATG TTGTCTTTTA 002480 002481 AATACTCCAA TTTTCATTCT AATATGAATG TTGTTATATT GTACTTAGAA ACTGTACCTT TAATATTACA TTACCTTTAT 002560 002561 TAAAAGTGCA TTGAACACAT CAATTTTAGA TGTGCTTTAT GTACTGTTAT CCTATAATAA AACTTCAGCT TCTAATGGAA 002640 002641 AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAGGAAAAAA AAAAAAAAAA AA |
Predicted Small Protein
Name | NONHSAT044219_smProtein_1532:1702 |
Length | 57 |
Molecular weight | 6661.6208 |
Aromaticity | 0.214285714286 |
Instability index | 51.9 |
Isoelectric point | 6.78985595703 |
Runs | 11 |
Runs residual | 0.0431303669009 |
Runs probability | 0.0326476208829 |
Amino acid sequence | MFLFTALFVTEGDKFSSHDYWLPCTAVFIHNSRHFPFLWKSCCYLNYKCNCVVNES |
Secondary structure | LEEEEEEEELLLLLLLLLLLLLLLEEEEEELLLLLLHHHHLEEEELLLEEEEELLL |
PRMN | - |
PiMo | - |