NONHSAT044223
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT044223 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
3910 nt |
Genomic location |
chr15-:60820272..60884716 |
Exon number |
2 |
Exons |
60820272..60824050,60884586..60884716 |
Genome context |
|
Sequence |
000001 agctgctgct gtggctcggg cggcggcggc gcggcggcgg cagagggggc TCCGGGGTCG GACCATCCGC TCTCCCTGCG 000080
000081 CTCTCCGCAC CGCGGCTTAA ATGATGTATT TTGTGATCGC AGCGATGAAA GCTCAAATTG AAATTATTCC ATGCAAGATC 000160 000161 TGTGGAGACA AATCATCAGG AATCCATTAT GGTGTCATTA CATGTGAAGG CTGCAAGGTA AGCCTTTTTA ATTGTTGTTG 000240 000241 TTTCTATTAA TGTTTGTTAG AATATATCTT TGTGATTTGT ATGTCTCCAC TTATGTCTTA AAATTCAACT CCTTAGAATT 000320 000321 TTGAATGATA AGAAATTACA GGATAGAAGA AATATTTTGG TGTTAAATTA CAATTAAAGA AGTTATATAT ATTTTTACTC 000400 000401 CTTCCTTCAA AATAATAGGA GATTACAAAA AGGTATTTGA GCATTGCTTG TTTATCACTT TCAACCCCAG AGTTGAACTC 000480 000481 ATGAGCAATC TCTGTGGCAA TCTTTTTTAA AAAAGAGCTA ACTCCAGACT TCTACAATGT CCCTGTCATA AGCTTATAAA 000560 000561 AAGACATCTC CAGTAAGTTT AATTGGAATG TCACTGAGTT GAGTCTTATT GTTAGCACAC ATAATGTTAA CACATCTGGC 000640 000641 AAAATTGTGG GAAAGCTAtc aggaagacct gagttccagt cctattgcct ccacttgtcc atattgtttt gaatgtgtct 000720 000721 taatctcttt gtcactcagt tgcttcattt ttaaagtggg tataacacct gatctttcta ctggttagga ctattccaag 000800 000801 aatagaagga gaacctgtac ataaaaaagt ccttacaaac agaaaagtgc tatttaactc taaatattat cagtattATT 000880 000881 TCTGCTATGA CTATTTTATT ATTTCTGACC TTGGTCATGG GGCAATGTGT ACAGCACATG CATAATGTGC AGATGAGAAA 000960 000961 CAGAGATGTT TATCCCAATA ATTCAAGACC CCCCAAGCCC AGATTACCTC TGTTATTCAA ATCTCAATTT ATTAAGATTT 001040 001041 AAATCCTCAT GCTTATATTG GAAGGGCCTC GAGACAGCTT ACAGGATAAA ACAGTGCAAA ATAAACAGGA GAGAAGCTAT 001120 001121 TTAAACATGC AGGAGGCCTT TGAGACAGCC GATTGCTACA ACCAGGCCTG AATCAGCCCT AAGGCTTTTT GAGGCTGAGG 001200 001201 CAAAAAATAA AATCCACGAA TTTGGTTAGC TTTCCTTTCA TGAAATTAGA AAATACAATG TTGTAAAATA CAAAATCACC 001280 001281 TATAGACACA AATGACTACT GAGAGACTTC AAGGAAATTA ACCTTATAAT TTCCTTAATT CTTCATTTTA CTGTTAGTCA 001360 001361 TGGTAACATT TGCTAATTTG TACATGTACA GATGCTTCAT GTTGATCCCA TCTTAGCAAA GCTTCAGATT TCCGCATACT 001440 001441 ACAGAACCAT CTATGCCCTT TACTTCCAAA ATCTGCCCTC CCTCAAAATT AGTTGACTAA TTAAATAAAT TAAGCAAAAT 001520 001521 GAGAGgcccg gtgtagtggt gtgtacctgt agtcccagct actcagggaa gacagctgca ggtttatcac ttgagtccag 001600 001601 gagttcaagg ttacagtgag ctatgatcac accactggac tccagcctgg gcaatggagt gagaccctct ctccaaaaaa 001680 001681 gtaaataaaa aTAATGAAAA AACAAAATGA AATAATCTGT CTGGTCTGTG CCATCCCAGG TTATAAGgtg agagtgatct 001760 001761 gcctgtgacc actgtcatcg cattgatttt tggagctgat ttggctgacg tggccaggta gccattgctt ttcaccctca 001840 001841 ccctgtcttg tgttctgcct cccaaatctg tgtccctggt agacatgtca tggcctttct caatagaggG TTTATAGACT 001920 001921 GCAGTGCTTG CCTGCTGGGA GTTCCAGTGC TTTTTGTGCA TTGCGTATCA CCTGGGTGTC TTCTTAAATG GACAGGGTTC 002000 002001 TAGGCAGCAT CCCGGATACC AGTTCACCAT TTGTCCCTTC ATTCTGCCCA AAAAACTGAT GGCTTCCTCT GAATCTGTCA 002080 002081 GTAAGGCAAG TGATTATCTA GGAATTGACA GAAGTGATTA TCTAGGAATG GAGTCTGGGG AAAGGACAAG GTGGGGGTAG 002160 002161 GGGCTACTTC ATATGAAATA CCCCAACAAT TTGGAAGATT AATTAACAAC ATGCTATTGA GTAAAACCTA AGTTGACTGA 002240 002241 GTACCATGGC ACAAACAATG TGAATTTTCT TTTTACTCTT AATATTTATC ATGACAAAAA TAAAAGCGAT AAGAAAACAA 002320 002321 AAGGTATCTA TTATTCCAAA GTTGCCATTT TTCTAGATTC CCTTCCAGAT CTTGTCTGCA TACCTCCTCA GTGCCAAAGT 002400 002401 GGTTTTCAGT TATCTGTGGC TCTGTTCCTC TGCTCTGTTG ACTTTATCCA ATGAAAACCA CAAAATAAAT AAAACATAAT 002480 002481 TTTATTAACA GATTGGGCCT ATGCCTAGCC AGGGACTTGA ACAATGTTTC ATGTTTATAT TTGATACATA TACTCTTTGT 002560 002561 TCTCCATTAT AATTTCTCTC TGCTATAACT AACACTTTTA TTCCTAGTTA TAAAAATAGA AGTCAAAAGA CTTCTATTTT 002640 002641 TGCCATTTTA TGTTAATTAT TTATCATGTT CTAACCAGGT AAAGGTGGTT CTATCATGAT CAATTGTAAA TAACTTTGCT 002720 002721 GAGATAGTGT AATTAAACAT AAGAAAAATT TCACATTAGA CATATCAAAT AGATATCTAA TGAGAGAAGA AAGGTGATCA 002800 002801 GTCATCTTCT GAGCTAATCA TTTTGTGAAC GTATTTTAAA TTGCATTTTT AAATTAACAA GCTGACACCA TAAGAAACTA 002880 002881 GAGGACCTGT TTAATTGCTG AAATAATTAT TTTGGCACAT AGTTGCTAAG CATTGCACAT GAACAGCAAA AATGGTAGAA 002960 002961 GCTTTAGTAG CTCTTTCTGT CATTTCTGGC TCTTCCTAGT TCATCCTCTC CCCAACCCCT TTGCTGTCTG Tagagagaca 003040 003041 gcaggtgcca tgcttctgct ctgactctgg aaccagactg tccgagttga aatcccagct ctgctattta ccagcttgag 003120 003121 cacctatacc actgctctgt gcctcagttc ccccatctgt aaaatgagga ctgtaattgt aataacttca tagggttgtc 003200 003201 acatgcattt aaggaaagta cctggaagaa tgccagatgc atcacaagca cttactaagt gttagctgtt gttatCATTG 003280 003281 TCATTACTAG GCAGACTTCT TGGTGGCTTG GTAATGCTGC TCTGTATAGT CAGATATTAT TTCTGGGACA TCTATGGATA 003360 003361 TAGTCTTGAT TGTTGTGACC ATTTGCAATG TGTTATGTAG AATCTGCCAA TAAAAAAGAA TACTATGAGC ACTCCCTTGG 003440 003441 GACCAAGCac tatgtaagca ctgtaaggga tccaaagaca tagaagacca catctttccc tcaagcagtt tatggtctag 003520 003521 ttgtagagat gaggcctgtg tagggaaagc taaatagcaa tgcaagaact aatatagagt aaggccacaa tctatgatat 003600 003601 acataagaag cacatatagg ctgggcacag tggctcacac ctgtagcccc agcagtttgg gaggctgagc tgagaggaag 003680 003681 atgtgagcac aagagttcaa gaccagcctg agcaacacag caagactctg tctctacaaa aaaattaaaa ataaaaaaaa 003760 003761 ctggctaggc atggtggtgt ttgcctgaag tcccaactac tcggaaggct gaagcaggag gattgcttga gcccaggagt 003840 003841 tcaaggctcc tggtgagcta tgatggtgcc actgcattcc agcctggcaa cagagcaaga cccctgtctc |
Predicted Small Protein
Name | NONHSAT044223_smProtein_623:787 |
Length | 55 |
Molecular weight | 5946.859 |
Aromaticity | 0.111111111111 |
Instability index | 44.4740740741 |
Isoelectric point | 4.50103759766 |
Runs | 7 |
Runs residual | 0.0330623306233 |
Runs probability | 0.0771696065813 |
Amino acid sequence | MLTHLAKLWESYQEDLSSSPIASTCPYCFECVLISLSLSCFIFKVGITPDLSTG |
Secondary structure | LHHHHHHHHHHHHHLLLLLLLLLLLLLEEEEEEEEELLLEEEEEEEEELLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTToooooooooo |