NONHSAT046816
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT046816 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1254 nt |
Genomic location |
chr15-:67220823..67227586 |
Exon number |
3 |
Exons |
67220823..67221131,67223877..67224321,67227087..67227586 |
Genome context |
|
Sequence |
000001 CATCCACCCT GACAGGTCCA AGAGAGTAGG AACTGTCTCC TCCCTGACAC CCCTTTGTAA AAACCAGGAA ATCTTTCCTC 000080
000081 TCACATTTTA CTGGCCAGGA CACATGCCCA CCCCTTAACT TGTCACTGGC AAAGGAGGCA GGTTTACCAT GAATGGCTTT 000160 000161 CACTAACCAG AATGGAGCTC TTCCCACAGC AGATGGCTGT GCAGAGGAGA GTGGGCAACA GAGGCCGGGG GCTTCTCTTG 000240 000241 CCAAGGAGAA GATGGAGAAG CCTGTGGGCC CCACTGCCAC CATCTGCCCC AGCCTCTCAT ATCCCTTCTG CCTGGGTGCC 000320 000321 TGCCTCAGTG TCCCTTTAGT CCCTCTTTCG GTCTGTCTTG AGGGGAGGCC ATGGCCTGTG AGGGGTATCA TTTAGGCTCT 000400 000401 CTGTGTTCAT TTCCTGTGGC TGCTGTAACA AATCGCCACA AACTGGGTGG CTGAAAGCAA CAGAAATCAA TTCCCTCACA 000480 000481 GTTCCGGAGG CCAGAAGACC CCAGTTGTTT TTCCTCCTGT GCCTTCTGAC GACAGGAAGG CATATTATCT CCCCCCAGCC 000560 000561 AGCTCCCGGG AGGTGTGTGC AACTGCATTC CATTTTGCTA TCTGTTTAAT TATCCATTCA GCCCAGCTTA CACTAAAGCT 000640 000641 CTTTCTCGTT TATTCACAGC CAGATCTGCT CTGGAATGCA GCAAAGAGCT CCTTCCTGCT TTCTCAGCCC CTGCAGCAGC 000720 000721 TCCTGCTTCA CTCCAAGAAA ATGCCAGCCC CCTAAGAACC TGTCCCTTTG GAACAGTGGA TCCAAAAGCT GACCCAAGAG 000800 000801 ACCTTGAACT TAACACCTCT GTGTCATGGG CTCCTTAATG ATAGAAAGAA GATTGCTTTA GAAGACTGGT TTGCAAACCA 000880 000881 GTCTGCTGGG CACTAGAAGC CTTGGGAAGA TTTGAAAAAT AAATCTTATT GGCCTCACCA TTTCATTTCC CATTTCAAAA 000960 000961 ACCTTCACAT CTTTTCCTAC AATTGTACCA ATTGTACAAT AGGGGCAATC CAAAGAGCCT GTGAGAAGGT TAAATGAGAT 001040 001041 AGCATATGCT TATTACCTGG CATGAAGTCA TGGGACAGAA GGAAAGCTTC TTTCTGTCTT CTCTGATGTT TTGCTGAAAT 001120 001121 GACTGACAGT AGACAGATTA ATAGGAGAAA AAGGCTTAAA AATTTATTTA CGTATATGTA AACATGACAG TCCTGAAAAT 001200 001201 GTGAGATTCA AAGAAGGCCC AGATGCTTGA GGCTTCAATA CCCTCTTGAT AGGG |
Predicted Small Protein
Name | NONHSAT046816_smProtein_152:394 |
Length | 81 |
Molecular weight | 8329.6303 |
Aromaticity | 0.05 |
Instability index | 49.28375 |
Isoelectric point | 6.10491943359 |
Runs | 13 |
Runs residual | 0.0236842105263 |
Runs probability | 0.0657467422174 |
Amino acid sequence | MAFTNQNGALPTADGCAEESGQQRPGASLAKEKMEKPVGPTATICPSLSYPFCLGACLSV PLVPLSVCLEGRPWPVRGII |
Secondary structure | LLLLLLLLLLLLLLLLHHHLLLLLLLLLHHHHHHLLLLLLLEEEELLLLLLLLLLLEEEL LLLLEEEEELLLLLLEEEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHH HHHHHLLLLLLLLLLLLLLL |
PiMo | oooooooooooooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTT TTTTTiiiiiiiiiiiiiii |