NONHSAT046816

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT046816

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1254 nt

Genomic location

chr15-:67220823..67227586

Exon number

3

Exons

67220823..67221131,67223877..67224321,67227087..67227586

Genome context

Sequence
000001 CATCCACCCT GACAGGTCCA AGAGAGTAGG AACTGTCTCC TCCCTGACAC CCCTTTGTAA AAACCAGGAA ATCTTTCCTC 000080
000081 TCACATTTTA CTGGCCAGGA CACATGCCCA CCCCTTAACT TGTCACTGGC AAAGGAGGCA GGTTTACCAT GAATGGCTTT 000160
000161 CACTAACCAG AATGGAGCTC TTCCCACAGC AGATGGCTGT GCAGAGGAGA GTGGGCAACA GAGGCCGGGG GCTTCTCTTG 000240
000241 CCAAGGAGAA GATGGAGAAG CCTGTGGGCC CCACTGCCAC CATCTGCCCC AGCCTCTCAT ATCCCTTCTG CCTGGGTGCC 000320
000321 TGCCTCAGTG TCCCTTTAGT CCCTCTTTCG GTCTGTCTTG AGGGGAGGCC ATGGCCTGTG AGGGGTATCA TTTAGGCTCT 000400
000401 CTGTGTTCAT TTCCTGTGGC TGCTGTAACA AATCGCCACA AACTGGGTGG CTGAAAGCAA CAGAAATCAA TTCCCTCACA 000480
000481 GTTCCGGAGG CCAGAAGACC CCAGTTGTTT TTCCTCCTGT GCCTTCTGAC GACAGGAAGG CATATTATCT CCCCCCAGCC 000560
000561 AGCTCCCGGG AGGTGTGTGC AACTGCATTC CATTTTGCTA TCTGTTTAAT TATCCATTCA GCCCAGCTTA CACTAAAGCT 000640
000641 CTTTCTCGTT TATTCACAGC CAGATCTGCT CTGGAATGCA GCAAAGAGCT CCTTCCTGCT TTCTCAGCCC CTGCAGCAGC 000720
000721 TCCTGCTTCA CTCCAAGAAA ATGCCAGCCC CCTAAGAACC TGTCCCTTTG GAACAGTGGA TCCAAAAGCT GACCCAAGAG 000800
000801 ACCTTGAACT TAACACCTCT GTGTCATGGG CTCCTTAATG ATAGAAAGAA GATTGCTTTA GAAGACTGGT TTGCAAACCA 000880
000881 GTCTGCTGGG CACTAGAAGC CTTGGGAAGA TTTGAAAAAT AAATCTTATT GGCCTCACCA TTTCATTTCC CATTTCAAAA 000960
000961 ACCTTCACAT CTTTTCCTAC AATTGTACCA ATTGTACAAT AGGGGCAATC CAAAGAGCCT GTGAGAAGGT TAAATGAGAT 001040
001041 AGCATATGCT TATTACCTGG CATGAAGTCA TGGGACAGAA GGAAAGCTTC TTTCTGTCTT CTCTGATGTT TTGCTGAAAT 001120
001121 GACTGACAGT AGACAGATTA ATAGGAGAAA AAGGCTTAAA AATTTATTTA CGTATATGTA AACATGACAG TCCTGAAAAT 001200
001201 GTGAGATTCA AAGAAGGCCC AGATGCTTGA GGCTTCAATA CCCTCTTGAT AGGG
[back to top]

Predicted Small Protein

Name NONHSAT046816_smProtein_152:394
Length 81
Molecular weight 8329.6303
Aromaticity 0.05
Instability index 49.28375
Isoelectric point 6.10491943359
Runs 13
Runs residual 0.0236842105263
Runs probability 0.0657467422174
Amino acid sequence MAFTNQNGALPTADGCAEESGQQRPGASLAKEKMEKPVGPTATICPSLSYPFCLGACLSV
PLVPLSVCLEGRPWPVRGII
Secondary structure LLLLLLLLLLLLLLLLHHHLLLLLLLLLHHHHHHLLLLLLLEEEELLLLLLLLLLLEEEL
LLLLEEEEELLLLLLEEEEL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHH
HHHHHLLLLLLLLLLLLLLL
PiMo oooooooooooooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTT
TTTTTiiiiiiiiiiiiiii