NONHSAT046875
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT046875 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2003 nt |
Genomic location |
chr15-:68126646..68131217 |
Exon number |
3 |
Exons |
68126646..68128119,68129428..68129771,68131048..68131217 |
Genome context |
|
Sequence |
000001 GAAATGATCC TTTCCAGGTA ACAGCCGAGC ATAGGGGACT GCGGGACATC TCCGCCTCTT CCTTGGCTCT GGGCCTTCGA 000080
000081 TGTAAGGCGT TAGAGGACAA TCTTTGTTGG CTGGATTTCT GTTCTTCCCC TAGAGATATC TGGTTCTTTG GAGGCCACTT 000160 000161 GGGCAATTGG GTTAACAATC ACTTACCTGA TACCTGCTCC CAAAACGAAT CCTATTGATG AAGGATCTTC TTTCTGAGCA 000240 000241 GTAAACCTGT GTTTAATTAA CCTTATGCAA ATGAGCTTAA TTGCTTATCA GTGGCTGTTG TCCAGAAGCA CCTAGGGATT 000320 000321 CCTTCCCTCA GACATTTTCA GCACCTAGAT GAACCGCAAA GTTGGAAGCC TTTCATCTAC ACATGTGTTG TGTGCCTGTG 000400 000401 GAGCCCTGGG CCCTGTGTTG AAGATTGCAA GGAAAAGCAA GGTGTGACCC CTGCTGTGGA CTTACTTTCA GTCTTAGGGC 000480 000481 AACAGACACT TACAACCAAG AATAACAAAG GGAGCCCTCG GAACATCCTG GGACTCCAAG GCTCCGACCC CCAGCGCAAA 000560 000561 GGAATCTAGG GACTGGCTTC CTGGCTGTAC CGCGCAGCGG GACTCCTCGT CTGCACAGCT TCGGGGAGGC CCAGAGCACG 000640 000641 CCCCTACTAG CCGGCTCCGT CCAAGGCCCA CCAAGACAAC CCGCCACGAA ACTTCCCGGC CCCCTCAGCC CAGGGCTCCC 000720 000721 GGTCCCGAGC TGCTGGCCGG TGGCGCGGGG CCTGCCGCCC GCCTTCTACG AGCCGCATGG ACGGAGGCCT GCGTGTTATT 000800 000801 TCATAGAGGC CGAAACGGAG ACCCAGGAAA GATAAAAGAA GGGCTCAACC CGGGACCCCC ACTAGCCAGC CGAGGGCGAG 000880 000881 AAATGAAAGC CAAGGCTGAA TGATTCCCTG TGCCGTGAGC TCTCTCCCAC TCCATCCACA CTCTCCTCCC TGCAAAGAGT 000960 000961 GTTCTGCAAT TTGCAGCGTC GTCTGTAGCC CAAGCAGGAG GTGCGCTGTG GAAACTGAGG CCGCTGGGAG GCCTTGCCAA 001040 001041 CCGTGACCCG GACGTCGGAC GCCCCAGCCG AGGCCCGGCG AGTCCTTAGC CCCTCTCGAA CTAAAATGGA CCGAACAGAA 001120 001121 AATGCGGACG GGGCTCCCTC CTTTCGGGTA GCGGCGGGGC AGACGGGAGG CCGTCTGTGA CCGAGCTCTC CAAGTCCCGC 001200 001201 CTTCCTTTCC AAGCCTGCCC GGCGGAGACC ACCTTACTCC CTGAGACCTC CGCCCTGCCG CAGCGCTCCC AGGCCAGGCC 001280 001281 AGGCCGGCGG TGCCCGCGCC ATCTAAAGGG ACAATTCTGG TTGAACCTGG GATTCCCGGC AGGGCGCCCT GTCTGTGAGC 001360 001361 GCCCCGGAGG TAACTTCCCC GGTGTGGCAG GCGTGGAAAT GGGCATGGAT GAACCCTCGG CGCCTTCGAG CTCTTGAGGA 001440 001441 AAGAGCCCGG GACCGCTGCG CTAAGGACCG TGACGTAATG CCCCTCCTCC ATCCCGGGCC CAAGGGAGGG TCCTAAACGC 001520 001521 GGAGAGGGAG TGCCCTGTGG GGGAAAACTG AGTGTGTCTG GAGGGCACAG TGGAGAGGTT GAGTGCTCGC TGCTGCCCAC 001600 001601 TTGAGCAGGC CCGATTCTGA CCCTGGGAGC CCCAGAACCC GCGGGGCGGC TCCCACCCCC ACCTGTTGCA CGGTGTTCCG 001680 001681 CCGCCCCGCT CCGCCGGTGC ACTCCCACCT CCGTAGCCCC AGAAGTGACA TCTTTTATTA TTATTATTAT TATTAAAAAC 001760 001761 GAAAGTCACG GGTACAGGGT GGTCTCCCCA AACAGGCTCC AGGTGGTTGC CATCTCGTGA GTCAGTTGTC GCCCTTTTAA 001840 001841 AGTGCTGTTA CATCAAGAGG TTACAACAAA AAATAGCCAA AGCAAAATCC AAAGGGGAAT GCAAAACGGG ACTGGAAGTG 001920 001921 GGTCCAGGAG AAGGAAGCAA AAATAACTTA CAGCACAAAT AAATTAAAGT GAACCTAATA CTGAAAAAAA AAAAAAAAAA 002000 002001 AAA |
Predicted Small Protein
Name | NONHSAT046875_smProtein_899:1045 |
Length | 49 |
Molecular weight | 5006.8526 |
Aromaticity | 0.0 |
Instability index | 73.8041666667 |
Isoelectric point | 7.57928466797 |
Runs | 8 |
Runs residual | 0.00109649122807 |
Runs probability | 0.0414679385267 |
Amino acid sequence | MIPCAVSSLPLHPHSPPCKECSAICSVVCSPSRRCAVETEAAGRPCQP |
Secondary structure | LLEEEELLLLLLLLLLLLLLLLEEEEEELLLLLLEEEEHHHLLLLLLL |
PRMN | - |
PiMo | - |