NONHSAT047067
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT047067 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2878 nt |
Genomic location |
chr15-:72452149..72456174 |
Exon number |
3 |
Exons |
72452149..72454353,72454614..72454718,72455607..72456174 |
Genome context |
|
Sequence |
000001 AAACCTGGTG TGGGCTCCTT AGGGCAAGTG AGATCGCAAG GGCCATGGTA AGATAGCTTC TCCTGTCTTA CTGCAGGAAG 000080
000081 TCCTCATCCC TGAGATGAAG TGGAGAAAGG TATGCCCTTC CTCCAGGTCC CTGTCTCTCC CAGACAACAT CCCTTGTATC 000160 000161 CCTCCATCAT CCGTGGACTC CACAGACAGT TTCTTCCCCT CCAGGAAGCC TCCAATGTCT GGTAAGTTCG GGAGGGCTTG 000240 000241 TCCATGGCAA CTACTTGCAA AGGCCAGACT TTCTGTCTTC CCAGTTCCAT AAAAAGGGCT CACCACAGCC AGCAGGGCTT 000320 000321 CTGAGAGCTG ATTTTTTTTT TCTCCCAATC CATAAAGAAA AGTCAAGAGC CCAAGTAGCT TCAGAAAATG GTGGGAGGTG 000400 000401 GGCATGGCCC ATGCCAGGCT GGGGTCCTGC CTGCCCTAAG AAGATGCCGA ACTGCTCTCC CACTGCAAAG AATGCTGTCT 000480 000481 ATGAGGAGGA TGAGCTGGAG GAGGAGCCCA GGAGCACTGG GGAGCTGAGG CTCTGGGATT ACCGGCTCCT CAAGGTCTTC 000560 000561 TTTGTGCTGA TCTGCTTCCT GGTCATGTCC TCATCCTACC TGGCGTTCCG TATTTCTCGG CTAGAGCAGC AGTTATGCTC 000640 000641 CTTGAGTTGG GATGACCCAG TCCCTGGGCA CAGGTAACAG CCACTTGGCC TTTGTCCCCA TTCCTTCTCC AAGAAGAATG 000720 000721 TTCTGGGTGC TAAGTCTCCA CCAATGATCC CTGTGGTTTA TGCTGCTGCT GTGCTAAGAC TGCCTATGAA GGAAAATATT 000800 000801 CCAGATCCCT CCTCCTCCCC GCAGCTCTTC TCTTCCCTCT ATGAGAGATC TGAAGTACGT GTTTACAAAG TAACTGGCTT 000880 000881 CTACAATTTT TGGACTCAAG CAAAAAGCCA GATTTTTTGG AACCAACTGA GGAATTCTGT ACACAAAGCT TCAGCAAACA 000960 000961 CTTAGAGAaa acaaacaaac aaacaaacTG GGTCCTTGGA AACAGTTCTG GCACACAGGC AGAACACTGG AGGCCACCTC 001040 001041 AAAGGACAGA GGCCATGCTT TCGCATTTGG AATGTGGCTC TGCCACACAG CTCACTCCTA TGGTGGGGTC AGAGGTCAGA 001120 001121 ACACAAACCA CCCATGTGGG CTCTGCTCCC TCCCAACACT CTGTGTTCCC ACAGGGCTTC TCTGCGGGCA GCCAGGCACC 001200 001201 TGTCAGGCTT GGGCAGGGGC CTGCTGAGAA TCTGTGAATG CAGAGGGGAG GGCTCATGGC CAGGATTCCA GCCAGAGATG 001280 001281 AATTTCCATG CTCTGGGCCA GGGCTCTGTG CCGGCCCCTC ATGAGGTGGC TGGCTGCATT ATGGGGAGAT GCTGCCCACG 001360 001361 GCGGAGATGG TGGCAGTGGC TGTGAAGAAC AGAGGTACCT GAATTCTGTG TCCTCAGCTG TCACTTTCCG GTGAGACAAG 001440 001441 TGGAGCAGGG CCTTTGATCA CTGTGGTCAC AGACCTGGTA CTGGGTTTTG CCCTTGTGTG CTCAAACATT TCTAAGGTGT 001520 001521 CCCAAGCCCT GGAAATAGGG AAGGGAAGGG TGGAGGCTTG GATCTGAGGT CTTGCTGTCC ACTCCCTGCC TGCCTGCCCG 001600 001601 CATCTCAGGC ATGGCCAACA GCAGCCCGTT GAGGGGGGCT TGTCTGGACA GTTGCGTGTG ATGGTGTTGA GCCATCACAG 001680 001681 GGCAGAGGTC ACTTGTGTCA CCCCCATAGT CATTGGGTTG CAGGCCATGG AGGAGGGACC TCCACTCCAT GGGGCCTATT 001760 001761 CTCCATTAAG GTGGAAGTGT CCACTGTGGG CCTAGCACAG TGCAGGAACC AGGCCAGGGG GTCTATCTCA TACCTCTGGG 001840 001841 GACAGGAAAG GTAGAGGATG AGGAGGTTGG ACGTGGTGGT GGCTTTGCCT TGGATATTCC TCTTCCTCTA TCAAGGCCTT 001920 001921 CTCTTCTTCT CTGTGTCCCA CAACTCTGGC CTCATCGCCC TGGGACTCCC ATCTGCTAAG ATAGTGGCTT TGGAGGTTCT 002000 002001 GGAAGGGCTT AGTGAGGAGG CCAGAAGTAT CAGGGAAAGT TGCTGGTGAT GGGGTGGGCG GTGTCAGAAG CAGCCACTGT 002080 002081 TTTCCCCTCT TCAGACACTG AGAGATTAAT CAGGGAATGA AATCCAGGTG GAAATTATTT ATTGTGAAGC AGACGACTGT 002160 002161 CTGTCCTGTT TATGACAAAC CCAAATGAGA ATTGGAGGGA CTACCAGTAA GTGGTCTCTT CATGCTCTCC CCATCCCAGT 002240 002241 TTTTAGGATG AAATTTAGAG CCTGGCCTTT TGTGTTGCTT GCACCAAATC TGTATGTCTC AGGTGAAACT CACTGTTCCA 002320 002321 TGAATGGTCA TCCTTTTTTT TTTTTTTTTT TTGGAACCAG CCCCTTTCAC CCTTTCATCC GTCTTTTTTT TTTAGGAAAA 002400 002401 TAACCCTTCT TGCTTCAGCA CTTCTCCCTG GTCCTTGCTG AAAGACAGAG ATAAAAATCC ATTCTCTGAG CCTTGCTTGG 002480 002481 TTGTCAGAGG CCATGAGAGG TGCCAGTTAT AGGTGGATGT GCCAAGATGC TGGTGAACTT GGTCTTCAGC TATACCCAGG 002560 002561 CTCAGAAAGG GCAAGAGCCA TGCTGCAGCG TAGGTGACTT TGGAGGTGCA CTTGGGGCCC AGGGCTTTGA GTGTTGCGGG 002640 002641 TGTGCCTGTC CCTCCAGATA GTGCTCTGTT TCTCTCTGTT GTCCCCCTGC CTGGTCCTCT GGGGCCACTG TGCTTTCTGC 002720 002721 TGTGTGCATT TATAAATGAT GTGTATTTTA TATAGACCTG CTTGCATTGG CTGATGCTCC TCTAATTCCC TGAGTTTGAT 002800 002801 TCAACCACCC TTGGGTTGTT TTGCTATGGC CTTAGCCTTT Gaaaatattt taaaataaaa aaCTTGATTT TTCTAGTG |
Predicted Small Protein
Name | NONHSAT047067_smProtein_410:676 |
Length | 89 |
Molecular weight | 10180.6557 |
Aromaticity | 0.113636363636 |
Instability index | 75.2715909091 |
Isoelectric point | 5.30950927734 |
Runs | 9 |
Runs residual | 0.0290909090909 |
Runs probability | 0.0515024828751 |
Amino acid sequence | MPGWGPACPKKMPNCSPTAKNAVYEEDELEEEPRSTGELRLWDYRLLKVFFVLICFLVMS SSYLAFRISRLEQQLCSLSWDDPVPGHR |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLLLHHHHHLLLLLLLLEEEEHHHHHHHHEEEEEEEELL LHHHHHHHHHHHHHHHHLLLLLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHH HHHHHLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | oooooooooooooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTT TTTTTiiiiiiiiiiiiiiiiiiiiiii |