NONHSAT047153
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT047153 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1620 nt |
Genomic location |
chr15+:74003473..74006855 |
Exon number |
2 |
Exons |
74003473..74003511,74005275..74006855 |
Genome context |
|
Sequence |
000001 CAGCCCTGCA GCCTCTGAAA CACTCTGACA GCAAAGAAGA TGATGGACAA GAAATAGCCT GACCATGAGG ACCAGGGAGC 000080
000081 TGCTACCCCT CCCTACAGCT CCTACCCTCT GGCTGCAATG GGGCTGCACT GTGAGCCCTG CCCCCAACAG ATGCATCCTG 000160 000161 CTCTGACAGG TGGGCTCCTT CTCCAAAGGA TGCGATACAC AGACCACTGT GCAGCCTTAT TTCTCCAATG GACATGATTC 000240 000241 CCAAGTCATC CTGCTGCCTT TTTTCTTATA GACACAATGA ACAGACCACC CACAACCTTA GTTCTCTAAG TCATCCTGCC 000320 000321 TGCTGCCTTA TTTCACAGTA CATACATTTC TTAGGGACAC AGTACACTGA CCACATCACC ACCCTCTTCT TCCAGTGCTG 000400 000401 CGTGGACCAT CTGGCTGCCT TTTTTCTCCA AAAGATGCAA TATTCAGACT GACTGACCCC CTGCCTTATT TCACCAAAGA 000480 000481 CACGATGCAT AGTCACCCCG GCCTTGTTTC TCCAATGGCC GTGATACACT AGTGATCATG TTCAGCCCTG CTTCCACCTG 000560 000561 CATAGAATCT TTTCTTCTCA GACAGGGACA GTGCGGCCTC AACATCTCCT GGAGTCTAGA AGCTGTTTCC TTTCCCCTCC 000640 000641 TTCCTCCTCT TGCTCTAGCC TTAATACTGG CCTTTTCCCT CCCTGCCCCA AGTGAAGACA GGGCACTCTG CGCCCACCAC 000720 000721 ATGCACAGCT GTGCATGGAG ACCTGCAGGT GCACGTGCTG GAACACGTGT GGTTCCCCCC TGGCCCAGCC TCCTCTGCAG 000800 000801 TGCCCCTCTC CCCTGCCCAT CCTCCCCACG GAAGCATGTG CTGGTCACAC TGGTTCTCCA GGGGTCTGTG ATGGGGCCCC 000880 000881 TGGGGGTCAG CTTCTGTCCC TCTGCCTTCT CACCTCTTTG TTCCTTTCTT TTCatgtatc cattcagttg atgtttattg 000960 000961 agcaactaca gatgtcagca ctgtgttagg tgctgggggc cctgcgtggg aagataaagt tcctccctca aggactcccc 001040 001041 atccagctgg gagacagaca actaactaca cTGCACCCTG CGGTTTGCAG GGGGCTCCTG CCTGGCTCCC TGCTCCACAC 001120 001121 CTCCTCTGTG GCTCAAGGCT TCCTGGATAC CTCACCCCCA TCCCACCCAT AATTCTTACC CAGAGCATGG GGTTGGGGCG 001200 001201 GAAACCTGGA GAGAGGGACA TAGCCCCTCG CCACGGCTAG AGAATCTGGT GGTGTCCAAA ATGTCTGTCC AGGTGTGGGC 001280 001281 AGGTGGGCAG GCACCAAGGC CCTCTGGACC TTTCATAGCA GCAGAAAAGG CAGAGCCTGG GGCAGGGCAG GGCCAGGAAT 001360 001361 GCTTTGGGGA CACCGAGGGG ACTGCCCCCC ACCCCCACCA TGGTGCTATT CTGGGGCTGG GGCAGTCTTT TCCTGGCTTG 001440 001441 CCTCTGGCCA GCTCCTGGCC TCTGGTAGAG TGAGACTTCA GACGTTCTGA TGCCTTCCGG ATGTCATCTC TCCCTGCCCC 001520 001521 AGGAATGGAA GATGTGAGGA CTTCTAATTT AAATGTGGGA CTCGGAGGGA TTTTGTAAAC TGGGGGTATA TTTTGGGGAA 001600 001601 AATAAATGTC TTTGTAAAAA |
Predicted Small Protein
Name | NONHSAT047153_smProtein_734:988 |
Length | 85 |
Molecular weight | 8837.3606 |
Aromaticity | 0.047619047619 |
Instability index | 81.3535714286 |
Isoelectric point | 4.79986572266 |
Runs | 7 |
Runs residual | 0.0506521079769 |
Runs probability | 0.0087440381558 |
Amino acid sequence | METCRCTCWNTCGSPLAQPPLQCPSPLPILPTEACAGHTGSPGVCDGAPGGQLLSLCLLT SLFLSFHVSIQLMFIEQLQMSALC |
Secondary structure | LLLLEEEELLLLLLLLLLLLLLLLLLLLLLLLHHHLLLLLLLLLLLLLLHHHHHHHHHHH HHHHHHHHHHHHHHHHHHHHHLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHH HHHHHHHHHHHHHLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTT TTTTTTTTTTTTTooooooooooo |