NONHSAT047272
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT047272 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2795 nt |
Genomic location |
chr15+:75111808..75118095 |
Exon number |
6 |
Exons |
75111808..75113108,75113416..75113567,75114170..75114241,75114983..75115050,75115900..75116819,75117814..75118095 |
Genome context |
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Sequence |
000001 ttcagtgctg gccacataag tgcccCTAGC TGTGAGTTGC GGGACAAGTG GAAGACAGAC AGCAAAGAGG GGCATTTAGG 000080
000081 AAAATGGAGC AAAGAAATGT GACACCATGG AGAGTCCACG GAGGGTCCCA CAGCGGGAAA GCTGAGGGCA ACCAGAGCGT 000160 000161 GGGAGTCCTT GAATGCCAGG ACCTTGGTCT GGTTTCTGAG GAGGAGAGTG ACATGGTCAG AGCTATGCTG GAAAGGTGGC 000240 000241 CACTGTGCAG TTGCTACTAC CAGTAGCAGC TGTGCTCTGG GGGCCTAAGA GTGTCAGATG GTCTGCTGCC ATGGCTCTAG 000320 000321 CCCAGGATGT TTTGGGATCG TCCAGTTCTG CCACAGGGGC CTGCCTCTGA CTGAGTGTGA GGTTCAACCC TCACCACCCA 000400 000401 CCCGTCTACC TGTCAACCCT CACACCTTTC CTAGGAAGTA AGCAAGACAA GCATCAGACG GTGGCCCAAA GTCACCCCTC 000480 000481 TTGCCTCGGT GGGATATCAT GGCGGTTAGG GTGAAGGCTG AGCGAGGGGG TTGCTGGGTG GAGGGGTCTT ACTTCTCCTT 000560 000561 CATCTGTCCC CTTCCAGATG ATCATGATGT CCTGTCCTTC CTGACCTTCA GCCTGAGTGA GCCCAGCCCA GAGGTGATGC 000640 000641 CAGCCCTGGC CTACCTGGGA ATGGCAGCCC AGGGACCCTG CCCTCACCCA TGTCATGGTG CCCTCAGACC TGCCATTCCA 000720 000721 GCCCTTACCT CCACCTGGCC TCTGAGCTCT GCTCAGGCCA GACCTTGTGC AGGGCAGTGC TGCGGGCCAG GGCCGGTGTG 000800 000801 TGAGGTCTCG CAGGCTGGCT GGCTCAGGCT GTGACATTAC AGTTCAGAGC GATCAGTGCC AGGTCTCAAA AGGTGcaggg 000880 000881 ggctgtggga gcacagagga ggagtcccaa ccagccaggg ggtcaaggaa ggctgcctgg aggagatgag cttaaaggag 000960 000961 cctcggaCCA GCACATATAG GCTTGAGGCC ACAGCAGGGA GGGAAGATGG TGGGGATCTG CGTGAAGGCA GAACTCAGAG 001040 001041 GGCTGGAAAC TGCAGGGCCA GCTGGCCAGG GAGGAAGGCT GGGCTCGTGG GGAAGCCTGT GGGAAGGCTC CCCTTGCTTC 001120 001121 TGGATCTCCC ATGGGTTTGG GGCCCGACTT TCTGTCTTCC TCCCCTAGGT TCCCCCTCAG CCCTTCCTGG AGATGCAGCA 001200 001201 GCTCCGCCTG GCGAGGCAGC TGGAAGGGCT GTGGGCAAGG CTGGGCTTGG GCACCAGGGA GGATGTAACT CCAAAATCAG 001280 001281 ACTCTGAAGC TCAAGGAGAA GGGGAAAGGC TCTTTGACCT GGAGGAGACG CTGGGCAGAC ACCGCCGGAT CCTGCAGGCT 001360 001361 CTGCGGGGTC TCTCCAAGCA GCTGGCCCAG GCTGAGAGAC AATGGAAGAA GCAGCTGGGG CCCCCAGGCC AAGCCAGGCC 001440 001441 TGACGGAGGC TGGGCCCTGG ATGCTTCCTG CCAGATTCCA TCCACCCCAG GGAGGGGTGG CCACCTCTCC ATGTCACTCA 001520 001521 ATAAGGACTC TGCCAAGGTC GGTGCCCTGC TCCATGGACA GTGGACTCTG CTCCAGGCCC TGCAAGAGAT GAGGGATGCA 001600 001601 GCTGTCCGCA TGGCTGCAGA AGCCCAGGTC TCCTACCTGC CTGTGGGCAT TGAGCATCAT TTCTTAGAGC TGGACCACAT 001680 001681 CCTGGGCCTC CTGCAGGAGG AGCTTCGGGG CCCGGCGGTG AGGGGAAAGT AGTGGGCAGC ATGGGGTCCC CAACCTTGAC 001760 001761 GTCTGGGCTC AGCCACCCTT CTTCCAGCAC TTCAGCAGCC CCAAGCCCTC CTGCCTTTGC CCTCCCCTCC CAGGACTGCT 001840 001841 GGCAAGCACA TCTGTGCCTG CGTCAGTGTC TGTGTGTCCG TGCATACGTG CCACCACACA TCTCATCTTT TCTCTGTCCT 001920 001921 CTCTCCTCTC TGAAGAGTCC CACAGACTCA GCAGCAGCAG GGCCCTGGAC ACCCCTCGAT CCAATATCCA ATGACCAGAG 002000 002001 GGGAAACAGG GTGGGCTGTG TCCAAGATCA CTGAGTCCAG TGGTAGTCAG CGCTTCCCCA TGCCCTGTCC CATCCTCGTT 002080 002081 CCCTCGCCCT CACCCTGCTC ACCCTGTCTT TGGCTCTTTA CTTCTCTCTT CTCTTCTCTT GAACCCTGGG CCCCTTGATG 002160 002161 ATCCCAGGCC CCAGGCCTTC CCAGCTGTTC CCACAGATGC AGCCATGGGA GCTGGGGTGG GGGAGGCAGC TTTGTACACT 002240 002241 GCCCCCTCTC CAAGTTCCCT GGATGAGAGC CAGGACGCCC CAAGCCTGGG GAAAGGAAAC GGAGCATGCA CATGGCCTAG 002320 002321 ATTCCAGGTC CCCCACTCCT TCTGGGTAAG AAGCTAAGCT AGGACCTTAG ACTTTCCCCT TTCAGAAGGC AGCAGCCAAG 002400 002401 GCCCCCCGCC CACCTGGCCA GCCCCCAAGG GCCTCCTCGT GCCTGCAGCC TGGCATCTTC CTGTTCTACC TCCTCATTCA 002480 002481 GACTGTAGGC TTCTTCGGCT ACGTGCACTT CAGCAGGCAG GAGCTGAACA AGAGCCTTCA GGAGTGTCTG TCCACAGGCA 002560 002561 GCCTTCCTCT GGGTCCTGCA CCACACACCC CCAGGGCCCT GGGGATTCTG AGGAGGCAGC CTCTCCCTGC CAGCATGCCT 002640 002641 GCCTGACCCA CCTCAGAGCC TGCTTTGCAT CACTGGGAAG CAGGCAGTGT CTTGGGTGGG GGCTTGGTCA GTATCCTCTC 002720 002721 CGTCTGGGTG CCCAGCTCCC ACGCACACCT GAGCTTTCGG CATGCTCCCA CCTCGTTAAA GGTGATTTCC CTCTC |
Predicted Small Protein
Name | NONHSAT047272_smProtein_83:265 |
Length | 61 |
Molecular weight | 6784.5224 |
Aromaticity | 0.0666666666667 |
Instability index | 58.955 |
Isoelectric point | 4.89056396484 |
Runs | 9 |
Runs residual | 0.000265957446809 |
Runs probability | 0.0489901666372 |
Amino acid sequence | MEQRNVTPWRVHGGSHSGKAEGNQSVGVLECQDLGLVSEEESDMVRAMLERWPLCSCYYQ |
Secondary structure | LLLLLLLLEEEELLLLLLLLLLLLEEEEEEEEELLLLLLHHHHHHHHHHHHLLLLEEEEL |
PRMN | - |
PiMo | - |