NONHSAT047280
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT047280 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
4706 nt |
Genomic location |
chr15-:75192334..75199137 |
Exon number |
3 |
Exons |
75192334..75195127,75197005..75198706,75198928..75199137 |
Genome context |
|
Sequence |
000001 CGACCGCGGA GCCCAGCGGG CGCGCGTTGC GGTTGTCTAC CCCGGGACCC CGGCCCAGCG GGGCTCGGGA CCGCGCGCCG 000080
000081 GGAGCTGCGG GGCCACCCTC CGGGCAGATC GGTAATAGAG CCCTCCGTCT GGGGGAGCGC ACCCCCGCGG CCGTGGAAAA 000160 000161 GCGGGGGCCA TACATGGTGA CGCGCGCACC CTCCATTCAA GCCAAGCTGC AGAAGCACCG GGACCTGGCC AAGGCCGTTC 000240 000241 TGCGGAGAAA AGGCATGCTG GGGGCCTCGC CGAACCGCCC AGACTCTTCA GGGAAAAGGT CTCAGCAGGC GCCACCTCCT 000320 000321 CTGTGCCAGC AGCTTTAGAG AAGGCTTTAA TCCCCAGGAC GGAGGCAGGG TGCTCTGGTT TAAGGCCGAG CTAGCGATTC 000400 000401 CCCTGATGCA ACCTGTCAGG TTCACTATCT TTAAAATGGG AAGAGGAACA ATCTCTCTTT TCCTTTAAGG ATGTGATAGG 000480 000481 ATCAGATAAA GGGCTTCGGA ATAAGGGAGT TCTGTGAGTG CACAGGCTCA TTCACTATCA TTCTCCTCCT CTGTTAGGGA 000560 000561 GGAGAATGGT GGCTGGAGTC CCCAGCAATG AGGACGAAGA GCAGTGTGGG AATGGCTAGA CCTGTTTTTG TTTGTTTGTT 000640 000641 TTTAacagaa tagtaaactc ggagctgcat agaaccttat tcagtgcctc cttttacaga tgagggttga aactcggaga 000720 000721 agtgaaggtt aacCCTAACC TTTTACCCAA AGACTTGCAG TTTTTGTGTC CTCTGATTAA ATAAGTGGGG AGAGGGTGCT 000800 000801 TTTCCTAGAT CAGGCAAGGG GAGGTGTGCT TTTTTCCAAG ACCTATGGGA GGAGTAGAAT ACAggccggg cgtggtggct 000880 000881 cacgactgta attccagcac tttgggaagc cgaggcgggt ggatcacttg aagtcaggag ttcgagacca gcctggccaa 000960 000961 catggtgaaa gcccgtctct attaaaaata caaaattagc tgggcacgcc tgtagtccca gctactcaag aggctgaggc 001040 001041 aggaaaatca cttgagcatg gtaggcggag attgcagtga gccgagatcg cgccactgca ctgcagcctg ggtgacaggg 001120 001121 ccagactctg tctccaaaaa aagaaaaaaa gaaTGAGAAC ATACACATTC TGAGGCACTG TAGCCAGGTA CATGGAGCTG 001200 001201 CAGGCAGTGG TGGCTGTGAC CAGGGAGAAG GCAAGTCAGT AGTGCAGTCA ATTCTTTCTC CTTCAGGGCG AGGACTCTGC 001280 001281 CTATCCCTGT GAAATGCCTA TGCTTTCATC TATGTTTGGT CTCTTCTCCC CCGTCTCCCC TCAGGTCAGT GAAGTTTAAC 001360 001361 AAGGGCTATA CTGCTCTTAG CCAGAGTCCA GATGAAAACC TGGTGTCCCT CGACTCTGAC AGGTGAGTGC TCCCCTTGGA 001440 001441 AATACCCCCT TGGGAAGCAA CTTGGCTGGG ACTGAAGATC GCCTGATGCC TTTGCTTGTT CCCTGTCTCC TCCAAGGCCC 001520 001521 TTCATGTACA TTCCAGGGCC GTTCTCTTCT GAACAATATC CCTTCCCAGG ATGGCTTGGT TAGAAGACTC ATAGGTAATC 001600 001601 GTGCTGCTCT AGAATTCGGA GCACCAATGT CCGGGGGATC ATCCTGCCCT GTTATGTTTG CATTGTTAGT GAGAGTGACC 001680 001681 CTGTCCCTGC CAGAACCAAT TGAGGGAACC AGTATTATTC AAGGCCTGTT CGGACTTGAG TTCTGTTGTG TGTGGCCTTT 001760 001761 GCTTCAAAAG TCTTCCAGAT GCCCTTGCAT GCTCTCCGCC TGATGATTTA CAGCTGTGCA CCACAGGTAC CTCCCGGAAC 001840 001841 TGACTGTTTT CCTCTTCTCC TAGTGATGGG GAGCTGGGAT CCAGATACTC CTCCGGGTAT TCATCTGCAG AGCAGGTGAA 001920 001921 CCAGGATGTG AGCCGGCAGC TGCTTCAGGA TGGGTATCAC CTGGATGAGA TTCCAGATGA CGAGGACTTG GACCTCATCC 002000 002001 CCCCTAAGCC CATGGCCTCT TCAACATGCT CCTGCTGCTG GTGCTGTCTT GGGGACTCTT CTTCCTGTAC CCTCCAGTAG 002080 002081 ACATTACCCT CCAAGGTGGG CCCTGCTCAC CATGAGGCCT ACAGAGCCCT GTTGGCCACT CATAGCTCAC ACAGTGCAGT 002160 002161 GAGCACTGAA GTCACTGACC CCTAGAAAGT GACCTGCAGG TAGCCCTTAC CTGTTGCTTC TCAGGCCAGA GGCCCCCATC 002240 002241 TGGGCTGTGG GCTGATAGGT AGAATTCTGT AGTTTTCCTC TGCTGTTGGA GCAGAGTTTG GAGAAGTCAC TTTAATAAGG 002320 002321 GCAAGACAGA AAATTCTGGT TCTTATGGTG GGTGACAAAG GTGGCTAAGG AAAACACTTG CAGACAGCTT GATTGGTATT 002400 002401 TGTCATAGTG CTTCAGGGAG GCAAAAAGGG AGCTCTTGTG CCCAGGCTGT GCTAGATAGT GTTGAATGGA GGCAGAAAAT 002480 002481 AGCACTTTAT GGTTTATTAT AGCTGGCAAT CCAAAAAAGA AACTGTTTGA GACCAGTTCG AGAAATTCCG TTTGCTCTAT 002560 002561 TCTTCCTAGC TCTAAGATGG TTTGCAGGCT TGACCTTCAA GACAGCATAA AGTGAGTCCT TTTGTCCCTC TTCAGGTTGC 002640 002641 ACCTGTCTAA CTATGACAGG GATCATAGCA GGTTGCTTAA TGATACAGCA GGATCCTGGC TTCCAGAATC CCTGGACCTG 002720 002721 GGGCATCCCC AACTGGTCCA ACCGTCCGGG TGAGTTTAGT GATTCTGGTT TGCCCTTCCC TAGTTAGAGA AAAACTGCTC 002800 002801 TGACATGTTC ATATTTATTT ATTTGTATTT CCTTGGTCTG GGTGAGTTTC TTCACCCAGT CTTTGAGCTA AAGATTAGGT 002880 002881 CGAAGGTACT GGGGCTGGCC CCAGAAGCCT GCAGTTTTTA TTATTACCAG CAGAGGGAGC TACAGGGAGC AGTCCGGTGC 002960 002961 CTTCCTATTG TTTACTTTTT AAACTTTTGA GAAGTAGCAA TGGACTCGTG AGAGTGGGTA TACAGCTGTG TGGGCTTTGT 003040 003041 CCTAGACTGA GGCTTACAGA CAGGAAGGGT AAGAGAGACC TAAGCCAGCT CCTAGACCCT TGCCTGAGGA AATCAGTCCA 003120 003121 CCAGTGTAGA GGGCCTCCCT TCACTCCAGC ATGGACCATT CTATTGCCAG ATTCTTCTGG TCACAGCATG GGCCTTACTG 003200 003201 GATACTCAGG ATTGGGCTTT AAGCAGACCT CTGGGTGTGA CACAGCCTCT TTCAGCCCCC AGCCCAAACA GCAGAAATAG 003280 003281 GCATAATTTC TGCTGTGACA CCCCCTACCC ACAAATTGGA GAGTATATCT TGCTATACTC TATACCAAGC CTCTTTCTAG 003360 003361 AATTTTTCCA ACAGGTTTTG TTTTGTTTTT TGGCTTAACT CAGAACCATG GTGAGCGTTC TGCtttgttt tgttggagac 003440 003441 agggtctctg tcacccaggc tggagtgcag tggtgtaatc acagctcact gcagcctcaa cctcccaggc ccaagcagtc 003520 003521 ctccCACATG GTGAGCTTTG AATGGGCATA GACAGGGTTC CCAGCCCAAT AGTCGGGATT GGGGTATAGG TTCTACATGG 003600 003601 GAAAGTATCC AGTCTCTTGC TTTACTCAGT GTCCTGTGAC CACCAGAGGC ATGAGAGGGA CAACACACTC TTTTCGCTCT 003680 003681 ACCACAAGGG GTGACTAGAA GATGAGCAAG TCTAATAAAA AGATACGGCC TTATTTGTTA TTTGTCTGAC AACCATCCTT 003760 003761 ACGATGGTAA TCCTGTGAGT GCCTGATGGA CATCTATCTT TGTGTTTTTC TCAAACCATG GAAGGTTGAG AGGAATATAC 003840 003841 AGTATCTGGG GGCTGACTTA CTCTACTAGC TAGGAGCATC ACAGCAGAGA GATAGGACAG AGACCAGAGT CATGCCAGCT 003920 003921 TGGGGTCTTG GGAAGAGAGG CAGATGGTTA CTCTGTTCTG GAATGGGACT CTGCAGCTCT ATGCAGTGGC CAACATTCTG 004000 004001 AGCACTTTGT GCAAATGCTT GTAGAGCTCA AGAACATCTC CATCCAGAAC CCCTTCCCCA TCTGCAGAGA CCATGTCCAG 004080 004081 GCCTTTCTTG TGTCTGCAGA GGTGAAGTGC ACATGTGGAA AGGGATCAAA TGTAGCACAG TGTAAAGAAA GACAGCAACA 004160 004161 CAGGTAGAGG GACCCAGTGT GTGCTGGGAG GTGGCTGTGG AAGGTAAGTA TAGACCTACA TCTCTGTTGG GGAGGTGGTC 004240 004241 AGGGCAGAAT GGCCTGGGTG TTTAGCAGCT TCTAGGGGTG AGGGTGGCAG GACCCCAAAA CCAAGGCCCT CTGCATCGTT 004320 004321 GTTGTAATAA TCAGCTCTGG CATATTCAGC TGCAACTGTC CCTGAAGAAG AGGTTTCTGA GCTGGCTGAC CCCATGTAGG 004400 004401 AGGGTGTTAC CTTGTAGAAA AAGCTGGAGG GACCTGGTGG GACAGTGCAG TGAGGCAGGG TAGAAATGGT CAGTTGTTTA 004480 004481 GGGCCAGTGG CCACATACCA AAATACCACC AATGTGCCCA GGGCCAAACT GCCTTAATTC TGAGTGCTGT GTGTTCTGCA 004560 004561 GGTGACAGTT TCCTGAGGAG AGGGGTGTAT CCAGGCTTAC CTCCCAGCAG GAGTGGTACC ATATGGTGTT TATGTACTAC 004640 004641 TCTATAGAAC TCTTGGCTTG CACTTCTACA GCTCTGTACA TTTATAAGAA TAAATGCAAT CACACT |
Predicted Small Protein
Name | NONHSAT047280_smProtein_1949:2161 |
Length | 71 |
Molecular weight | 7932.2619 |
Aromaticity | 0.1 |
Instability index | 68.9285714286 |
Isoelectric point | 11.4196166992 |
Runs | 13 |
Runs residual | 0.0408769448373 |
Runs probability | 0.0207288736701 |
Amino acid sequence | MGITWMRFQMTRTWTSSPLSPWPLQHAPAAGAVLGTLLPVPSSRHYPPRWALLTMRPTEP CWPLIAHTVQ |
Secondary structure | LLEEEEEELEELLLLLLLLLLLLLLLLHHHLHHHHLLLLLLLLLLLLLLEEEELLLLLLL LLLLEEEELL |
PRMN | - |
PiMo | - |