NONHSAT047280

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT047280

Source

NONCODE4.0

Same with

,

Classification

sense

Length

4706 nt

Genomic location

chr15-:75192334..75199137

Exon number

3

Exons

75192334..75195127,75197005..75198706,75198928..75199137

Genome context

Sequence
000001 CGACCGCGGA GCCCAGCGGG CGCGCGTTGC GGTTGTCTAC CCCGGGACCC CGGCCCAGCG GGGCTCGGGA CCGCGCGCCG 000080
000081 GGAGCTGCGG GGCCACCCTC CGGGCAGATC GGTAATAGAG CCCTCCGTCT GGGGGAGCGC ACCCCCGCGG CCGTGGAAAA 000160
000161 GCGGGGGCCA TACATGGTGA CGCGCGCACC CTCCATTCAA GCCAAGCTGC AGAAGCACCG GGACCTGGCC AAGGCCGTTC 000240
000241 TGCGGAGAAA AGGCATGCTG GGGGCCTCGC CGAACCGCCC AGACTCTTCA GGGAAAAGGT CTCAGCAGGC GCCACCTCCT 000320
000321 CTGTGCCAGC AGCTTTAGAG AAGGCTTTAA TCCCCAGGAC GGAGGCAGGG TGCTCTGGTT TAAGGCCGAG CTAGCGATTC 000400
000401 CCCTGATGCA ACCTGTCAGG TTCACTATCT TTAAAATGGG AAGAGGAACA ATCTCTCTTT TCCTTTAAGG ATGTGATAGG 000480
000481 ATCAGATAAA GGGCTTCGGA ATAAGGGAGT TCTGTGAGTG CACAGGCTCA TTCACTATCA TTCTCCTCCT CTGTTAGGGA 000560
000561 GGAGAATGGT GGCTGGAGTC CCCAGCAATG AGGACGAAGA GCAGTGTGGG AATGGCTAGA CCTGTTTTTG TTTGTTTGTT 000640
000641 TTTAacagaa tagtaaactc ggagctgcat agaaccttat tcagtgcctc cttttacaga tgagggttga aactcggaga 000720
000721 agtgaaggtt aacCCTAACC TTTTACCCAA AGACTTGCAG TTTTTGTGTC CTCTGATTAA ATAAGTGGGG AGAGGGTGCT 000800
000801 TTTCCTAGAT CAGGCAAGGG GAGGTGTGCT TTTTTCCAAG ACCTATGGGA GGAGTAGAAT ACAggccggg cgtggtggct 000880
000881 cacgactgta attccagcac tttgggaagc cgaggcgggt ggatcacttg aagtcaggag ttcgagacca gcctggccaa 000960
000961 catggtgaaa gcccgtctct attaaaaata caaaattagc tgggcacgcc tgtagtccca gctactcaag aggctgaggc 001040
001041 aggaaaatca cttgagcatg gtaggcggag attgcagtga gccgagatcg cgccactgca ctgcagcctg ggtgacaggg 001120
001121 ccagactctg tctccaaaaa aagaaaaaaa gaaTGAGAAC ATACACATTC TGAGGCACTG TAGCCAGGTA CATGGAGCTG 001200
001201 CAGGCAGTGG TGGCTGTGAC CAGGGAGAAG GCAAGTCAGT AGTGCAGTCA ATTCTTTCTC CTTCAGGGCG AGGACTCTGC 001280
001281 CTATCCCTGT GAAATGCCTA TGCTTTCATC TATGTTTGGT CTCTTCTCCC CCGTCTCCCC TCAGGTCAGT GAAGTTTAAC 001360
001361 AAGGGCTATA CTGCTCTTAG CCAGAGTCCA GATGAAAACC TGGTGTCCCT CGACTCTGAC AGGTGAGTGC TCCCCTTGGA 001440
001441 AATACCCCCT TGGGAAGCAA CTTGGCTGGG ACTGAAGATC GCCTGATGCC TTTGCTTGTT CCCTGTCTCC TCCAAGGCCC 001520
001521 TTCATGTACA TTCCAGGGCC GTTCTCTTCT GAACAATATC CCTTCCCAGG ATGGCTTGGT TAGAAGACTC ATAGGTAATC 001600
001601 GTGCTGCTCT AGAATTCGGA GCACCAATGT CCGGGGGATC ATCCTGCCCT GTTATGTTTG CATTGTTAGT GAGAGTGACC 001680
001681 CTGTCCCTGC CAGAACCAAT TGAGGGAACC AGTATTATTC AAGGCCTGTT CGGACTTGAG TTCTGTTGTG TGTGGCCTTT 001760
001761 GCTTCAAAAG TCTTCCAGAT GCCCTTGCAT GCTCTCCGCC TGATGATTTA CAGCTGTGCA CCACAGGTAC CTCCCGGAAC 001840
001841 TGACTGTTTT CCTCTTCTCC TAGTGATGGG GAGCTGGGAT CCAGATACTC CTCCGGGTAT TCATCTGCAG AGCAGGTGAA 001920
001921 CCAGGATGTG AGCCGGCAGC TGCTTCAGGA TGGGTATCAC CTGGATGAGA TTCCAGATGA CGAGGACTTG GACCTCATCC 002000
002001 CCCCTAAGCC CATGGCCTCT TCAACATGCT CCTGCTGCTG GTGCTGTCTT GGGGACTCTT CTTCCTGTAC CCTCCAGTAG 002080
002081 ACATTACCCT CCAAGGTGGG CCCTGCTCAC CATGAGGCCT ACAGAGCCCT GTTGGCCACT CATAGCTCAC ACAGTGCAGT 002160
002161 GAGCACTGAA GTCACTGACC CCTAGAAAGT GACCTGCAGG TAGCCCTTAC CTGTTGCTTC TCAGGCCAGA GGCCCCCATC 002240
002241 TGGGCTGTGG GCTGATAGGT AGAATTCTGT AGTTTTCCTC TGCTGTTGGA GCAGAGTTTG GAGAAGTCAC TTTAATAAGG 002320
002321 GCAAGACAGA AAATTCTGGT TCTTATGGTG GGTGACAAAG GTGGCTAAGG AAAACACTTG CAGACAGCTT GATTGGTATT 002400
002401 TGTCATAGTG CTTCAGGGAG GCAAAAAGGG AGCTCTTGTG CCCAGGCTGT GCTAGATAGT GTTGAATGGA GGCAGAAAAT 002480
002481 AGCACTTTAT GGTTTATTAT AGCTGGCAAT CCAAAAAAGA AACTGTTTGA GACCAGTTCG AGAAATTCCG TTTGCTCTAT 002560
002561 TCTTCCTAGC TCTAAGATGG TTTGCAGGCT TGACCTTCAA GACAGCATAA AGTGAGTCCT TTTGTCCCTC TTCAGGTTGC 002640
002641 ACCTGTCTAA CTATGACAGG GATCATAGCA GGTTGCTTAA TGATACAGCA GGATCCTGGC TTCCAGAATC CCTGGACCTG 002720
002721 GGGCATCCCC AACTGGTCCA ACCGTCCGGG TGAGTTTAGT GATTCTGGTT TGCCCTTCCC TAGTTAGAGA AAAACTGCTC 002800
002801 TGACATGTTC ATATTTATTT ATTTGTATTT CCTTGGTCTG GGTGAGTTTC TTCACCCAGT CTTTGAGCTA AAGATTAGGT 002880
002881 CGAAGGTACT GGGGCTGGCC CCAGAAGCCT GCAGTTTTTA TTATTACCAG CAGAGGGAGC TACAGGGAGC AGTCCGGTGC 002960
002961 CTTCCTATTG TTTACTTTTT AAACTTTTGA GAAGTAGCAA TGGACTCGTG AGAGTGGGTA TACAGCTGTG TGGGCTTTGT 003040
003041 CCTAGACTGA GGCTTACAGA CAGGAAGGGT AAGAGAGACC TAAGCCAGCT CCTAGACCCT TGCCTGAGGA AATCAGTCCA 003120
003121 CCAGTGTAGA GGGCCTCCCT TCACTCCAGC ATGGACCATT CTATTGCCAG ATTCTTCTGG TCACAGCATG GGCCTTACTG 003200
003201 GATACTCAGG ATTGGGCTTT AAGCAGACCT CTGGGTGTGA CACAGCCTCT TTCAGCCCCC AGCCCAAACA GCAGAAATAG 003280
003281 GCATAATTTC TGCTGTGACA CCCCCTACCC ACAAATTGGA GAGTATATCT TGCTATACTC TATACCAAGC CTCTTTCTAG 003360
003361 AATTTTTCCA ACAGGTTTTG TTTTGTTTTT TGGCTTAACT CAGAACCATG GTGAGCGTTC TGCtttgttt tgttggagac 003440
003441 agggtctctg tcacccaggc tggagtgcag tggtgtaatc acagctcact gcagcctcaa cctcccaggc ccaagcagtc 003520
003521 ctccCACATG GTGAGCTTTG AATGGGCATA GACAGGGTTC CCAGCCCAAT AGTCGGGATT GGGGTATAGG TTCTACATGG 003600
003601 GAAAGTATCC AGTCTCTTGC TTTACTCAGT GTCCTGTGAC CACCAGAGGC ATGAGAGGGA CAACACACTC TTTTCGCTCT 003680
003681 ACCACAAGGG GTGACTAGAA GATGAGCAAG TCTAATAAAA AGATACGGCC TTATTTGTTA TTTGTCTGAC AACCATCCTT 003760
003761 ACGATGGTAA TCCTGTGAGT GCCTGATGGA CATCTATCTT TGTGTTTTTC TCAAACCATG GAAGGTTGAG AGGAATATAC 003840
003841 AGTATCTGGG GGCTGACTTA CTCTACTAGC TAGGAGCATC ACAGCAGAGA GATAGGACAG AGACCAGAGT CATGCCAGCT 003920
003921 TGGGGTCTTG GGAAGAGAGG CAGATGGTTA CTCTGTTCTG GAATGGGACT CTGCAGCTCT ATGCAGTGGC CAACATTCTG 004000
004001 AGCACTTTGT GCAAATGCTT GTAGAGCTCA AGAACATCTC CATCCAGAAC CCCTTCCCCA TCTGCAGAGA CCATGTCCAG 004080
004081 GCCTTTCTTG TGTCTGCAGA GGTGAAGTGC ACATGTGGAA AGGGATCAAA TGTAGCACAG TGTAAAGAAA GACAGCAACA 004160
004161 CAGGTAGAGG GACCCAGTGT GTGCTGGGAG GTGGCTGTGG AAGGTAAGTA TAGACCTACA TCTCTGTTGG GGAGGTGGTC 004240
004241 AGGGCAGAAT GGCCTGGGTG TTTAGCAGCT TCTAGGGGTG AGGGTGGCAG GACCCCAAAA CCAAGGCCCT CTGCATCGTT 004320
004321 GTTGTAATAA TCAGCTCTGG CATATTCAGC TGCAACTGTC CCTGAAGAAG AGGTTTCTGA GCTGGCTGAC CCCATGTAGG 004400
004401 AGGGTGTTAC CTTGTAGAAA AAGCTGGAGG GACCTGGTGG GACAGTGCAG TGAGGCAGGG TAGAAATGGT CAGTTGTTTA 004480
004481 GGGCCAGTGG CCACATACCA AAATACCACC AATGTGCCCA GGGCCAAACT GCCTTAATTC TGAGTGCTGT GTGTTCTGCA 004560
004561 GGTGACAGTT TCCTGAGGAG AGGGGTGTAT CCAGGCTTAC CTCCCAGCAG GAGTGGTACC ATATGGTGTT TATGTACTAC 004640
004641 TCTATAGAAC TCTTGGCTTG CACTTCTACA GCTCTGTACA TTTATAAGAA TAAATGCAAT CACACT
[back to top]

Predicted Small Protein

Name NONHSAT047280_smProtein_1949:2161
Length 71
Molecular weight 7932.2619
Aromaticity 0.1
Instability index 68.9285714286
Isoelectric point 11.4196166992
Runs 13
Runs residual 0.0408769448373
Runs probability 0.0207288736701
Amino acid sequence MGITWMRFQMTRTWTSSPLSPWPLQHAPAAGAVLGTLLPVPSSRHYPPRWALLTMRPTEP
CWPLIAHTVQ
Secondary structure LLEEEEEELEELLLLLLLLLLLLLLLLHHHLHHHHLLLLLLLLLLLLLLEEEELLLLLLL
LLLLEEEELL
PRMN -
PiMo -