NONHSAT047706
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT047706 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
2597 nt |
Genomic location |
chr15-:80846950..80855285 |
Exon number |
3 |
Exons |
80846950..80849274,80852397..80852508,80855203..80855285 |
Genome context |
|
Sequence |
000001 GGGAGAGCAG TTTTGCAATG GGAACTCCTC CGTCTACCTT CTGGTGAAAT GGGGTGCTGC ATCTGGGTCA TTCTGTAACC 000080
000081 ACGAAACACA AGATGAAATG CCATGGGGTT ACCAGGAGGG CGAGGAGAGA TGACCTGCAG TCAGGATCTG AAGACGGCTC 000160 000161 CTGGAGGGAA ATGGGGTTTG GAACACAGTT GGAAGGGCTG AAGCAAGATG TGAGAGCCCT GTGGAGAGAG GAGGTGTGTT 000240 000241 CTCTCTCTCA CCTCAGCTGA ACCTGGGCTC AGGAAGCTGA AACTCCTCCA TGTGAATCCT GGTTCTCTCA TTCATCACCT 000320 000321 GTGTGGCGGG ACGGTGCTTT TAGGTCACCA AGCCTCACTA CACTCACCTG TAACATGAAG ATGATGATGC CTACCTCCTC 000400 000401 CGACTACTGT GCAGATTTAA TAGTGCATGG GACAAGGCTT CCCATATGTT TGGCACACAG TAGGTGCTCG GTACACAGCA 000480 000481 GCTAACAGTC ACGATGTGCA TGACACTGTT ACTCAGGTGG CCACCCTCTT GGGCTCCCAG GTCATCCTAA ATCCCTCTCT 000560 000561 CTCTTCACCA TGTCTATCCA AAGCATCAGC ACTCATCAAA CAACTGTCTC CTCAAGTTGC CCCCTATTTC AAATTCCCAC 000640 000641 TGCTCCTGCC CATATTCTGG CCACATCACC TCTTACTTGG ACAATTTTAA AGCCTCTTGT CTTTGTTTCC AGTTATTTCC 000720 000721 TCCACCTGTC TCTTCTGCAA ACCTGGGCTA CTAAAGTGGT TTTTCAAAAC ACTGCTCTGC CTAAAATCCT CAAAGTCATC 000800 000801 CTCGCTTACC TTTATTTGTA TTTTATTTTT CTTTCTTTAT TTATTTGAGA CAGAGTCTTG CTCGTCGCCC AGGCTGGAGT 000880 000881 GCAATGGCAC GATCTTGGCT CACTGTAACC TCTGCCTCCC GGGTTCAAGC GATTCTCTTG CCTCAGCCTA CAGAGTAGCT 000960 000961 GGGATTACAG GCGCCCGCCC CCACACCCGG CTAATTTTTG TATTTTTAGT AGAGACAGGG TTTCACCATG TTGGCCAGGC 001040 001041 TGGTCTCGAA CTCCTGACCT CATGATCTGC CCACCTTGGC CTCCCAAAGT GCTGGGATTA CAGGCGTGAG GCACCACACC 001120 001121 CGGTCTCTTA ACTTTGTATT GATTGAGTGA GTGAGTGAGT GAGTGAGACA GAGTCTCACT CTGTCGCCCA GACTGAAGTG 001200 001201 CAGTGGTGCA ATCTTCACTC ACTGCAACCT CTACCTCCCA GGTTCAAGCT ATTCCCCTGC CTGAGCCTCC CAACTAGCTG 001280 001281 GGTCTACAGG TGCGTGCCAC CATGCCTGGC TAATTTTTGT ATTTTTAGTA GAGGTTTTGC CACATTGGCC AGGCTGGTCT 001360 001361 CGAACTCCTG GCCTCAAGTG AACTGCCCAC CTTGGCCTCC CAAAGTGCTG GGATTACAGG CATGAGCCAC CACACCTGGC 001440 001441 CCTCACTTAC CTTTAAATGA CTGAGGAGAG AATCCATGTT CTTCAGCATG GGTTAAGAGG CCTTTCATAA CTTGGCTGTA 001520 001521 CCAGGCTCAT TCTATCACCA CTGCCCACCT CCTCCAAGTC AGCCAGTGTC ACTCCAGCCA CTAGGAACTG CTTAGGATTC 001600 001601 TCCCTTTTGC ATCTCTAGGG CTGCCCCTTC AGTCTAGAAT GTTCACTCAT TTATTCTATG CTCATCCTTT AAGACCCATC 001680 001681 CCAGTTATTC TCTCCCCTGG AACAATTCCT GCCTCTTCCC CATGCAGTTA ACCTCTCCAG CCTCTGTGCT CTGCAATGTT 001760 001761 TTTCTTCATG ACCCTTTAGA GTTCTCCTCC TATTACATAG TACTTATTTA CTGATGTGTG TCTGTCTTCC CTACTAGACT 001840 001841 GTGAGTGACT TCCTAGCAGG GGCCCTGAGT GAGGCCATAG GTAGGACCTT GCAGCCTGCC TGGCACATAG TAGGACTAAT 001920 001921 GTCCTGCCAG CCACATCCAC AGGTGCCCAG ACTATGCATC AGCTTTAAGT GGGTACTGGC AGTATGTACC TGCTGGAAGC 002000 002001 TCTCACGCAG ATGGCTTTGA TCCTCAGGGT GGCAGAATTC CAAAATGTCC TTTCCCAGAA GATCCTAAAT AAAAGAGACA 002080 002081 AGCTTTAATA ATCCCAGATC CATTTGTAAT TATTTGTATA CTCACTGTGA TACAACAGTG TTCATTTCCA TCTCCTTTAA 002160 002161 CTCATCTCCT TTAGCCTGTC CCACCCCAGA TTTTTTGAAA AAGTGAGTGC AAAATTTCCC TGGGAGCCGT CAGAGAACTG 002240 002241 GCTTCTTGGT ATTCACTCTA AGTTCTTCTG GCATGCTCAA TATCCATTTC TAATTTTGCT AAGGCACTAC ATCAGTAGCT 002320 002321 TCAGAATGCA ATTTTATTTT TGTTTGTCTT GGAGAGGCAA ACTGCAATAA ACATACTTTA ATAACATAAA AAGAAAGCAA 002400 002401 AATGATAGCC TGAGGACAGA TGTGTTGCTT ATGAAAACTG GAATTGTTTA AATGTGGAAA TTGTAGCTCT CCTGTGGCTG 002480 002481 AAAAAATGAG GTTATCATAA AATAACTGTA CTTGTTAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA 002560 002561 AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAA |
Predicted Small Protein
Name | NONHSAT047706_smProtein_569:847 |
Length | 93 |
Molecular weight | 10388.313 |
Aromaticity | 0.141304347826 |
Instability index | 44.9836956522 |
Isoelectric point | 9.58197021484 |
Runs | 14 |
Runs residual | 0.0169690334689 |
Runs probability | 0.0195952254776 |
Amino acid sequence | MSIQSISTHQTTVSSSCPLFQIPTAPAHILATSPLTWTILKPLVFVSSYFLHLSLLQTWA TKVVFQNTALPKILKVILAYLYLYFIFLSLFI |
Secondary structure | LLEEEELLLEEEEELLLLLLLLLLLLHHHHLLLLLLHHHHLLLEEEHHHHHHHHHHHHHH HHHHHHHLLHHHHHHHHHHHHHHHHHHHHHLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLLL LLLLLLLHHHHHHHHHHHHHHHHHHHHHHLLL |
PiMo | oooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTTTTTTTTiiiiiiii iiiiiiiTTTTTTTTTTTTTTTTTTTTTTooo |