NONHSAT047879
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT047879 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1881 nt |
Genomic location |
chr15-:83674050..83680346 |
Exon number |
3 |
Exons |
83674050..83674444,83677300..83677427,83678989..83680346 |
Genome context |
|
Sequence |
000001 GCAGCGGGCT GAGGCACCTT CGGGCAACAC CCAATACTCG GGGCTCCGCT CGGCTTCTTT GCGCCGAGAT GCCTAAGAAG 000080
000081 GCTGGTGCGA CGACCAAGGC CAGTAGCAGG TCCCGTGGCG GCAGAGGGGT GGGCCTCAGG GGTACTTGTT GAAGAGCGCG 000160 000161 GGAGAAGCGG GGCCCGGGAG TGAGTGGAGG CACTGCCAGC GGCTTGCCGT CTCTCAGTTC CGGGGCTCAG GACAGCCGCC 000240 000241 GCCACCCCCA GAGCTGCGGC CTGCTGCCGT CGCCCCGCCT CAGTAGGCTG CGCTGCCGTC CACCTGGTGA TTTCTGAGCG 000320 000321 CTGGGCCCGG CGGCAGCCGA GCTCTCCTTG GGCTGCGTGt gctgaccttt ggcctcctac ccgcactccc agtccagcaa 000400 000401 ttcatgttcc cgcagcggca tgacctgcgt ttccccagga ggctgtattc tgctttctcc tcccttgctt tggctgatcg 000480 000481 caccccttct gtcaagaata cagcactccc atttccacca tctttgtttg gccaacccca gtccgtttct cagactcagc 000560 000561 tcaagcactg cctcctgctg gcagcattct ccagtgcccc aatgctgatt tgcctgtggg gtaatgttct gtgcctatct 000640 000641 catcggtgca cttagcacag tgtattataa ttttgtatgt tctttctccc tcgcagcagt ccgagctcct tgagagcaag 000720 000721 gaccatgtac cttttcatct ttacatatcc attgcctaca taTTTGTTGA ACGAAAGTTC CTAGCACAGC CCCTGTCCCA 000800 000801 TAACAGGCCT TTAAATATCA AGCACTATTT TTTTTTCCTC CCTTTCCCGC AACATGCAGA CATACACACt ttcaccaaca 000880 000881 tttattagct ccgactgcat gagatacaat gatgaataat aaatgatccc tgcccccaag gaattGGAAA TACAAAGCAG 000960 000961 AGGGAGGAGC AAGCATTAAG GTTTAGAAGC CAGAGTTAGG TTTTCTTGCA AGGGGGGAAA AAACACTGTT GGGTTGATGG 001040 001041 GAACCCTTCG TGGGAAAATT GAGTAGAGCC TTGAAGGTTG TGGGAAAAGC TTTCTAGGTG GCCAGAAGTC CCTGGACACC 001120 001121 ACTGATGAGC CTAGTTTGTC TGTTAAGGGT GAAAGGGGGT AGTGGAAGAA TCAAATTAAA TGTGTGGGAA AATATTTTGT 001200 001201 AACCTGTAAA GTTGTGTGGT TGTCATTTTA GGGTAAAAGC CAGAGCAAGG AACCAGAGAG ACCACTTCCT CCCTTAGGTC 001280 001281 CTGTGGCAGT TGATCCTAAA GGATGCGTCA CCATAGCCAT CCATGCAAAA CCTGGCTCCA AACAAAATGC TGTAACAGAT 001360 001361 TTGACAGCAG AGGCTGTAAA TGTAGCTATT GCAGCACCTC CATCAGAGGG AGAGGCTAAT GCTGAGCTCT GTCGGTATCT 001440 001441 TTCCAAGGTC CTAGAACTCA GGAAGAGTGA TGTGGTTTTG GATAAGGGTG GTAAATCTCG TGAAAAGGTG GTGAAGCTTT 001520 001521 TGGCTTCTAC AACTCCAGAA GAGATCTTGG AGAAATTAAA AAAGGAAGCC AAAAAAACAT AAAAGCAAGA AATGAggccg 001600 001601 ggcgcagtgg ctcatgcctg taatcccagc actttgggag gccgtggtgg gcggatcacc tgaggtcagg agttcgagac 001680 001681 cagcctgacc aacatggtga aaccccatct ctacgaaaaa tacaaaatta gccagatgtg atggcgcatg cctgtaatcc 001760 001761 cagttactca ggaggctgag gcaggagaat cacttgaacc tggggggcgg aggttgcagt aagccgagat cgcgccgttg 001840 001841 cactccagcc tgggcaacaa gagtgaaact ctctcccccc g |
Predicted Small Protein
Name | NONHSAT047879_smProtein_419:607 |
Length | 63 |
Molecular weight | 6787.9584 |
Aromaticity | 0.0645161290323 |
Instability index | 90.414516129 |
Isoelectric point | 8.42633056641 |
Runs | 9 |
Runs residual | 0.00847926267281 |
Runs probability | 0.0124340026301 |
Amino acid sequence | MTCVSPGGCILLSPPLLWLIAPLLSRIQHSHFHHLCLANPSPFLRLSSSTASCWQHSPVP QC |
Secondary structure | LEEELLLLEEELLLHHHHHHHHHHHHHHHHLLLLLLLLLLLLEEEELLLLLLLLLLLLLL LL |
PRMN | - |
PiMo | - |