NONHSAT048023
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT048023 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
3626 nt |
Genomic location |
chr15-:85212777..85217057 |
Exon number |
2 |
Exons |
85212777..85213300,85213956..85217057 |
Genome context |
|
Sequence |
000001 agcgattctg ctgccacaac ctcctgagta gctgggatta caggcgtgca ccaccatgcc cagctaattt ttatattttt 000080
000081 agtagtgaca gggtttcacc atgttggtca ggatggtctc gatctcctga cctcatgatc cacccgcctc agcctcccaa 000160 000161 agtgctggga ttacaggcgt gagccaccgt gcccagccAa gaatctgcat ttttaacaag ccatcaagcg gttgtgacag 000240 000241 aggaggtcta ggctttaaga aacacCAGTG TATGGAATGG GAGTTTGGGG ATGGGGCAAG AGAGACAGGT CTCAGTGATC 000320 000321 CTGCTAGAAG GGAGAGGACA GAGAGGGGTG AAGACAAGAG ACAGGAAGTG AGGGGAGTTC TTTTTTTTTT TTTTTtccca 000400 000401 aggcagaaga atttttctta gtacagaaca aaatgaaaag tctcccatgt ctacttcttt ctacacagac acggcaacca 000480 000481 tccgatttct caatcttttc cccacctttc cgccctttct attccacaaa accgccattg tcatcatggc ccgttctcaa 000560 000561 tgagctgttg ggtactcctc ccagaccggg tggtggccgg gcagaggggc tcctcacttc ccagtagggg cggccgggca 000640 000641 gaggcgcccc tcacctcccg gacggggcgg ctggcctggc gggggctgac ccccacctcc ctcccggacg gggtggctgc 000720 000721 tgggcggaga cgctcctcac ttcccagacg gggtggctgc cggacggagg ggctcctcac ttctcagatg gggtggctgc 000800 000801 cgggcggagg gactcctcac ttctcagagg gggcggttgc caggcagagg gtctcctcac ttctcagacg gggcggccgg 000880 000881 gcagagacgc tcctcacctc ccagacaggg tcgcggccgg gcagaggcgc tcctcacatc ccagacgggg cggcggggca 000960 000961 gaggcgcttc ccacatctca gacgatgggc ggccaggcag agacgctcct catttcctag atgggatggc ggccgggcag 001040 001041 agacggtcct cactttccag actgggcagc caggcagagg ggctcctcac atcccagacg atgggcagcc aggcagagac 001120 001121 gctcctcact tcccagacgg ggtggcggcc gggcagaggc tgcaatctcg gctctttggg aggccaaggc aggcggctgg 001200 001201 gaggtggttg tagcgagccg agatcatgcc actgcattcc agcctgggca ccattgagca ctgagtgaac gagactccgt 001280 001281 ctgcaatccc ggcacctcgg gaggccgagg ctggcggacc actcgcggtt aggagctgga gaccagcccg gccaacacag 001360 001361 cgaaaccccg tctccaccaa aaaaatacga aaaccagtca ggcgtggcgg cgcgcgcctg caatcgcagg caccgggcag 001440 001441 gctgaggcag gagaatcagg cagggaggtt gcagtgagcc gagatggcag cagcacagtc cagcttcgac tcggcatcag 001520 001521 agggagaccg tggaaagaga gggagaggga gaccgtgggg agaggcagag gcaggggcag gggcatggtc aggggcagag 001600 001601 gcagaggcag aggcGAGTTC TTAAAGGGAA GTGAAATGTG TCAAAAACAA AATGTGTGTT CTTCAAGTTT GCCTGAGGCT 001680 001681 TTGATGGTGT AGATATTATG TGGGAGGTAA TTTCTGTTTG TGCTGTCTTT GGCATGGTCT GGGCTGTTTT AAAGTGTGCA 001760 001761 AAGGTCAGCC TCCACTTCAG CTCAGCGTCC CTATGACAGG CTCTAGCTTA GTACAATATT GCCAGTCCGC TCTGGAGTCC 001840 001841 AGCGATAGAA GAGGAGGATA AAGAAGAAAG TTTTACATTT GCTAACCACC TATTCCGCCC ACATCGATGG TACCCTGCTA 001920 001921 ATTTTCTCTT TCTGCCGTGA ATGCTTATGA TGTCAAAGTA GTCTTTTGCA TGGAGAGGAA TTTAAGCCCT GGGAGAAAAT 002000 002001 AGGATTTCCC CAAGAGAAAG CAAAAAGAAA AGGCCCGGAC attcagacat tcaatcaggc aggatgtact ggatatctcc 002080 002081 tatgtgtaag gcactatgtt gaccttgagg atacaggggg aacaagatag gcatcattgt tgcctttata gagcttctag 002160 002161 tttggtaggg gagacacaca tgtatcgaat ctgttgtaca actaattatt taagtaaaag tatgataatt attataaAGA 002240 002241 CCTCAAAGGA AATGTATCAG GTGCTGTAAG ATAATTTAAC AGGTGGTTTT GCTTAGTTTG AGGGGAAAAA Ctttaggggc 002320 002321 atgaggaatt agaaagagct agtgaaaaga aagtgtagca gccaaagagt taggtgaaga aacaaatctg tggtacatta 002400 002401 agaaaccaag aaggaggaat ttccagagca tatttgtggt catgaaagtc aaatgctgcc aagatggaaa ggaagatggg 002480 002481 agttgagaCT GGTTTGCTAC ATATGGTGAT GAAAACTGTT CTAGAAAAGT TTCAAGTTAA TAGGACCAAA CACAGCTTAC 002560 002561 AGGTGATTAA AAAATGAGAA GGTGGTGAAA TCCTAAGTAC TATAATGAGC TCTtacactc actttttggc cacttaacat 002640 002641 gaagtacttt gtaatattct ggctgtgctt gctttgtctc cccagctaga ttgacagctt cctgaaggTT ATGATGATAA 002720 002721 ACCTAGCCCC TAGCACTGTA TCAACATGTA GCATTAGAGT CACCacctgg agatctaaga ccttggctct atctggtgct 002800 002801 ggttctgcca cacagaaacc atgtaccttg ggcatgatca tctgtttcct catctctaaa atggtgatat tcctaacttt 002880 002881 cctatcactt gggcttttgc aaggatcaaa tagggcagta tatagaaatg gactttgtga attgaaaatt agtattctat 002960 002961 agaagatatt gataatattC AGTGAGTGAC AACAGCTGCT TTACATCGGA AATTCTGTGA TAATCAGTTT TTTGTTTGTT 003040 003041 TTAGATTTGT TCCTTATATT GGAATTGTGA CGATCCTCAT GAATGACTAT CCTAAATTTA AGTATGCAGT TCTCTTTTTG 003120 003121 CTGGGTTTAT TCGTGCTGGT TCATCGTGAG TAAGAAGCCT GCCTTGCTGT TCCTGGGAAG ATGCCATAGT TTTCGTTACT 003200 003201 GGATGTTTGG AGTAGATACT GGTCTGTGAT TGGTGGAATG GAGAACACAC GTGTTGGTGC TTCTGGGTAG CACTGGTTTG 003280 003281 CATTAGTTTA TGTTTCCATG CCAGAGTTTG TGTGGGCGGG CGCATGTGCA CCACAGAGTG CACTCGAGGG GACTTTCAGT 003360 003361 CACAGGATTT CATAATTGTC ATTGTCACAC TTTCAAATTT TTGTACATCA GTGAATTTTT TTATATTAAA AGGTTGAGCC 003440 003441 AAAGCCCCCA GTGTTTGTAT TTTGAAGCCA AGCTTCACTT CTAAAGTGCC TACAGAGACT TGTAAATGAA AATGCAGCTC 003520 003521 TGCACGAGTT TGAAACCGTC ATACCTCCTT CTATTAGGAA TGGCATATAC TGAGGTGGTC GTAAGTCTTA ACTTCTAAAA 003600 003601 TTTTAAATAA AAGACTTTGC ACATTG |
Predicted Small Protein
Name | NONHSAT048023_smProtein_1025:1267 |
Length | 81 |
Molecular weight | 8274.2111 |
Aromaticity | 0.025 |
Instability index | 74.62875 |
Isoelectric point | 9.46588134766 |
Runs | 11 |
Runs residual | 0.00131578947368 |
Runs probability | 0.0396251866841 |
Amino acid sequence | MAAGQRRSSLSRLGSQAEGLLTSQTMGSQAETLLTSQTGWRPGRGCNLGSLGGQGRRLGG GCSEPRSCHCIPAWAPLSTE |
Secondary structure | LLLLLLLLLHHHHLLHHHEEEEELLLLHHHEEEEELLLLLLLLLLLLLLLLLLLLEELLL LLLLLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |