NONHSAT048121

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT048121

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1013 nt

Genomic location

chr15-:86629031..86659938

Exon number

6

Exons

86629031..86629604,86631535..86631574,86650766..86650885,86653004..86653092,86653674..86653770,86659846..86659938

Genome context

Sequence
000001 gaagacctga ggtatcaggg gtaggggttg ctctgcttgt gtaagtccca tagtgtgaag gccagagaac caagagatgg 000080
000081 tcaagaagag agacaagacc aaccccgcct cttccttctc cttctcgacc tactcaaagt aaagatgagg atgaagaccc 000160
000161 ttaagatgat ccactcccac ttaatgaata gagcatcacg acctgtgcag actccccagc atcataacag gaaggtccca 000240
000241 cgatcacgag cacattgcct tcagcatcca gcactgaatA TGGTGAATTG CACTCTGAAG AGCTTCCTAA GCTTGTAAGA 000320
000321 AAGTGATTCT GAAAAGCTCA ACATTTTGGT AGAATGGAGA GATTTGACAT TGCTTCTGCT CCAAAAGCAA AAGACTTGGG 000400
000401 AAGGGCACCC TGGGAGTTGA GAACATCCAC CACAGAGAGG CCTGGCGTAA AGGAGATGGG ACTCACACCC AAGAGGATGC 000480
000481 ATTTCCATAC ACCCATTTCT GAAATATGAA GAGGTGTCCA GTCTGTTTGA TTCATAGCTG CCTGTTCCAC AACTGCAGAT 000560
000561 ACAGTAATTG ATAACCGAGA CCAAGTTCTC ATCCCCATCT CCCAGGGCTG GAACTGGGGC TGTGTTTGGT TCTCATAAGA 000640
000641 TCAGTTCCAG TTTTAGAAAC TGAGTAAATT GTGGAGTAAA TATTGCCAAG TGATGGCTTT CTGCTGTAGG CGTGGGTCGC 000720
000721 TGTTGGCCAT TTGCCTCAGC ATATCACCAG CAATGCACCT CATTGCATCA CTGCATTTCC AATTACACCT CAAAGCACCA 000800
000801 CTGGTCCCCT GTCCACCCTC TGCCCTGCAG AGGTGGGTGT TCAGGGAGAC AGATCCAAAA TCTGGGCTCA GAAGATGGAA 000880
000881 ATGCCAACTG CTCTCAATTT GAGAGTGGGG ATGAGACTTT TTGACTCAAC TCTGGTTAAT TCAGCCATGC TGTCAGAGCT 000960
000961 GCTTTGATGC AAGGACATCT GAATGCTATC TGAATGCTGC CCCTAAAATA ACA
[back to top]

Predicted Small Protein

Name NONHSAT048121_smProtein_692:901
Length 70
Molecular weight 7814.3908
Aromaticity 0.0724637681159
Instability index 79.1942028986
Isoelectric point 9.96356201172
Runs 11
Runs residual 0.0200889654183
Runs probability 0.0597228244287
Amino acid sequence MAFCCRRGSLLAICLSISPAMHLIASLHFQLHLKAPLVPCPPSALQRWVFRETDPKSGLR
RWKCQLLSI
Secondary structure LLEELLLLLHHHHHHLLLHHHHHHHHHHHHHHHLLLLLLLLLHHHHHHHHHHLLLLLLHH
HHHHHHHLL
PRMN LLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLL
LLLLLLLLL
PiMo iiiiiiiiiiiTTTTTTTTTTTTTTTTTTooooooooooooooooooooooooooooooo
ooooooooo