NONHSAT049676

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT049676

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1497 nt

Genomic location

chr15+:93426526..93441977

Exon number

5

Exons

93426526..93426773,93428745..93428814,93429399..93429484,93435234..93435302,93440954..93441977

Genome context

Sequence
000001 CTCTTCTCGC ACTGCCCCTC CGTGGTCGGG GGCCGGCTCT CGCCGGCGGG ATGCGCCTCG GTGCCCTGGG CCCGAGTCGT 000080
000081 AGGGTCCTGG GGTAGGGGGC ACGCGGGGCC CCGCTGCAGA GCCCGCGGGC GGCAGGTGGG CGGGGGGCAG CCTCGTCGCC 000160
000161 GGGACTGGAT CCGCCGGGAA AGGGGCGGCG GGTGAATGCC GGCGAGAGCC CGAAGGGGAT CGGGCGTGGA GAGCCCCTTT 000240
000241 CTGTCCTGGT GACTTAAGAG ATTAAAATTA ATTTGGTTGC TGTTGGTTCT GAACAAATAA TGAGTTCTTT TATTTGAGGT 000320
000321 ATGCCATTTT GAAGACTGAG ACGTTGGAGT TTTATCCTAG AGGATAAAGG AAATCTTTGG GAAAGTCAGT ATTTTATATA 000400
000401 GCAAAAATAT GAACCTCAAA CTGAATCCTC TAAAGGCCCC ATACAATGAA GTAGACATTG GTGGAAACAT TTACACCCAG 000480
000481 TCAGCTTGAA GAGTTTCAAA TGGACCCTAC CACTGAGAAA TCAAGATGGC AGTCTACTAT GGGGAATTGA GGAAAAATGG 000560
000561 ATTAATACAA GAGTCCTGTG ATAATATACA ACCAAGACAG GGTTCTTTTA ACATGGATTC CATGCAGTGA ATGAAGACAT 000640
000641 AGGTTTCTTA CCCAACACAA ATGGACAGTG GATTTGACTT TCTAAAGACT TTTTTTGTGG ACATTTTGAC ATTTGGAGAA 000720
000721 GAAAGATGGC ACACTAACCC AGATAATAGT TTTTATGCCT GGAATTTTTT GCAGTTTGAT TTGTATGCGT ATGACCTCTT 000800
000801 GAAATGTTAA TTTTTAATAA AATTTGTAAC ACTTAAAAAT TTCTCAGTTT GGGTTTTTTT TTTTAAGTGG AAGTTTAATT 000880
000881 AAATGTTTAG TTTTATTTTA GTAATACTTT GGCCTTTGTA GTTGCCGAGT GGTAAAGTGT ACTGAATATG AATAAAGCTG 000960
000961 GTAAATTGGA AATGGTGTAA TCGAAAACAT TTTACTTGGT TTATGAAGAT TTACGTTTTT CACAAAGTTG TGCTCTTAGA 001040
001041 TGGTCATTTG GTTTAAATAC TGTTTTGTTT GTGCTTTCAT GAAACACCTT TCAAAACAAC TCAATGGGTA ATAATAGAAT 001120
001121 CTGATTTTAA TCTGCCACAA GATTTTAATG AACTTGAAAC AAACTGCTTG TTGCTCGAAA ATTCAGGATG AGTGATACAC 001200
001201 ATATACTTCT GAATTATTTT GTGTTGATTG AAATGGTTTC TTAAGCTTTT TAATACTATA AATACATCTT GCTATAGAAT 001280
001281 ATTCATCTGA ATATTTAAAT TAATGTCTCC TATTGTCTTA CTATTAGAGG AAGAAGTGTT GGATTTATGG GTTAGGGTCC 001360
001361 TTGGAGTATT CACAATTTTT TAAATTTGAA ATTATGTGTG TAATCCATTT TATATAACTT TGAAGTAGGA TTAATATCTT 001440
001441 GTATCGTCTT TATTTTGTAC AATTGGGGAT TTAGAATAAA TGAATTGCAC CCTGCCA
[back to top]

Predicted Small Protein

Name NONHSAT049676_smProtein_1187:1243
Length 19
Molecular weight 2125.5061
Aromaticity 0.111111111111
Instability index 85.0277777778
Isoelectric point 4.35198974609
Runs 4
Runs residual 0.0438596491228
Runs probability 0.0306482953542
Amino acid sequence MSDTHILLNYFVLIEMVS
Secondary structure LLHHHHHHHHHHHEEELL
PRMN -
PiMo -