NONHSAT050732
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT050732 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
4679 nt |
Genomic location |
chr15+:97954414..97976003 |
Exon number |
4 |
Exons |
97954414..97954508,97969937..97973129,97973586..97973792,97974820..97976003 |
Genome context |
|
Sequence |
000001 TTTTATAGGT TCATCAAAAT AAGATATGAT CAAGGTACAA AAGAGTTAAA GAAGCTATTT ATTTTAATGT TTCCTTGGAG 000080
000081 AGCACACTTG TTATTTGCTT GTTTTAACTT TCATGCtttt tttttttttt ttttgagaga gagagagaga cagtttcact 000160 000161 atgttgccca ggttggagtg cagtggtgca atcatagctc actgcaaccc gggacgccta gcctcaagtc atcctcccac 000240 000241 ttcagctacc cagctagtac ccaccaccgc acccagctct tttttaaaaa attttttata gagatggggt cttgctatga 000320 000321 gttgcccagg ctggactcaa actcctgacc tcagaagatc ttcctgcctc agctttccaa gttgcATCTG GCTATTTACA 000400 000401 GGCTTTCAAA AAGTGTTTGT TGTATCTCTA CCTTGTCCCA TCATTGTGTT AGATACACTC ACATTACAAA TGTTGTCAAA 000480 000481 AATGCTCACA TCATAAAGAG GAGAATTAAT ATGTGAAATC TGAAGGCAGA GAACAAGAAT AAGAGATTCA CCAAGTAAAA 000560 000561 CAAAAAACAT GGGTTTGAAA TAATGGAATA TGTATTATTA AAACAAAAAC ATTAACCTAA AGGCTAGTTC ATGGttttta 000640 000641 tttaattttg atttttatat atttGCCACA TGAGCTTTTC CCCAAATAGG TTACTGAGAT ACATAGCCAC AGGATGCACC 000720 000721 TGCCTAAATG CCCTGCAAAA CACAGTCATT TAATATTATT CTGTGGTTCT TGCGGCATTC ATCATACTGA GCCTTATGAT 000800 000801 GCAACTGGAA GAGTTAGGAC CCAAGACTCT ACCTTTCCAT TTTACCTATt gtgttgtttc ccatcactgc tgtaacaaat 000880 000881 caccacacac agtgacgtaa agcaatgcat attgttagct tacaattctg gaagtcagaa gtcagcaatg agtttcacta 000960 000961 ggtatgaaga attccaggtg atggtctgca aacctgagtt ccttctagag gctcttaggg gaaaaatcta tttccttacc 001040 001041 ttttccaact tctaggggct gcttgtgttc cttgcctcct ggccattctc tccaaagaca gcagcatctt caaatctgtc 001120 001121 tttgattccg cttccattat cgcatcttct ctagctcttc tagggaaact tttgatcaca ttgggcccaa cagacaatcc 001200 001201 agaatcattc gtctcaatgg ccttaactta ccgacatctg tgaagtccct tttgcaatgt gggacaacct gttcataggt 001280 001281 tccatggaat aggacctgga catttggttg gcgggGTGGT CCTCTCTTCT GTTTAAATCA CCTGTACTCA AAAAAAAACA 001360 001361 TAAGGCTTTG TGACAAATTG TATTTAAGAT GTTATAAATG CCAGTGTGTT CACTTTGTAA ACATTCAATA TTGAATGTTG 001440 001441 TTATGGCTTA TAATATCATC AATATTTATT GTATTTTTTG TGATGAACTG TAGGAAAAAA ATACTTTTTC CCTTCTTCAG 001520 001521 TCAGTCATTA GTCTCATTTG TCTCATTCTA GACTAAGGTT AGCACTCAAA CAAAAACTAT TTATTAGCTA ATGAGAATAA 001600 001601 TGAAAGCAGG CTATTTTGTA TATTAATAGC TTTGCATTAG GCATAATGAA TTTTATTCCA CAGGGCAAAA GGGATTTCAC 001680 001681 AAATGAAAAA ACTAGGAACC AATGTTCAAC ATATATCCCA GAAATTAGAT GGCTAGGATT GGCTATGTAC AAGAAAACAC 001760 001761 ACATTTTAAT TATCTCATTT TCCCCTCCTA TTATGTGACT TTCATAATAG Aaacatggca taatggaggt agcccaaggc 001840 001841 tttggaatta gaccaaccag agttcaaatt ctggttgttc tacctatcag atattttcat taaggtaatt ttttaaatgc 001920 001921 ttctcagctt ttgcaaaatg gatattataa tattcaccac actgagatat tataaagatt aagtaaaata atgtatgaag 002000 002001 atgactttac ataAATAAAC TGTTAATTTG CTTTGCTCTA TTGTCTTTGC TTTTAAAATA GTTGTATCTA CTTATATAGA 002080 002081 TTTGTCTTCA TGCTTATAGC TGAAATAGTT GAAAATATTT TATTCTATGA ATTGAAAAAA TAAAGACTAC TGGCTTTTAT 002160 002161 CTTTCACTAA AATGTAAGTT TCTTGCATTT TAGGAAAATA AATATGGCAC CAAATTTGTC TGCAGGCACA GAGATTACAT 002240 002241 TCCTCGAATG TTAATATCTA CCTATCTATA TATCCTATTT GCCGTCAGGT TCTTTTGAGG GATAATGATT TGTTTTAGAT 002320 002321 TATATTCTCA ATAAGTGATG AAATTTATAG ACTCTCCTTC ATAGTCACTC AGCAATGAAA CAGAGCAAAC AATCATTAAT 002400 002401 AAATGATGGA CGTTCTACGT AGGATTCTGT GTTCTAGGTA TGTATGCAAA AGATGATCTT ACTCTTGAGA GCCACTAGAA 002480 002481 CTCTTTGAAG AAAAAAAAAT GCTATTTGCT ATAGGGAAAT CTTTCTGGAA AAGTAATAAT TTCACCTTTG AGTCAGCTTC 002560 002561 CCTGGACTCT TGCCTCATAC ATCTTCAGCC AAGGTCAGTC CATTATGAAA ATCCACTCTC CCTTCCCCAT GAAAGAACAT 002640 002641 TCGAGGCATA CTTATTATAT TAACTGAATT GTTACATATG TATTAAAAGT TTATAGTATG TGTTAGCATT TATTTATTTT 002720 002721 TTGTAAGATG TCTTTCCAGG AATATATAAC CCTGGTTCAT AATATTGTGC CCTTTGTATC CAAGATTTGA TATATGTGAG 002800 002801 TAAACATACA ACTGTCTATC TGGGGGCAAG TAAATCGAAA ACCAAGAATC ATCTCAAGTG TTGGAAATCA TATGGTATAG 002880 002881 AATTCATTAC CATTTGTGAA CTGGAATGGG CAGCAAGATA TTTGAATAAA AATTAAACTA GTTCTATAAT TGGTGATTTG 002960 002961 AAATTTTTTG AAAAAGCCAC GGCAGtgaaa tagtttggat gtcccctcaa aatctcatgc tgaattgtaa tccccagtgt 003040 003041 tggaggtggg gactggtggg aggtgtttgg gtcactatag tgcgttttca tgagatctgg tcatttaaaa tctgtagcac 003120 003121 ctccctcccc ttcttgctcc tgttttttcc atgtgaagat gcctgcccca gctttgcctt ccaccatgag taaaagcttc 003200 003201 ccaagtcctc cccagaagca gatgctggcg ctatgcttct ggtacagcct gaaaaacctt gagccaatta aacctcaggt 003280 003281 aagtctttTA GCTATCCAAA TCTGATTCCA TAAGACTATT TTTGTCGCAA GTAACTATGG TGGCTATCCT CAAAAGATCT 003360 003361 GTAAGAAAAG CATTGCATAG AATCAGAGAA AAGGTTGAAC AATTTAATAA ATTGGAAAGC CAAATCCAAC CTAGGAATCT 003440 003441 CAGCAACAGT TATACATGGA TGTTCCTTCT GCCTCCCAGA GATGGCTGCC TGATACCTGG CTCCAAAGGC TTGTTTTAAA 003520 003521 CAAAGGTCAT TAATGAGTCT CCTGCTCATG CCACATATCA TTCATATGTG GCATGGTTGT AGAACTTCCT AATCTTTACA 003600 003601 AGAACCAAAG AAGCCTGGAA ATGCCCCATT CAGAAAAATA TGTTTGAGAC TTTGCAAAGC TCCTTTCTCT AATCCTTATG 003680 003681 ATTTCTTCTT TCACAGTGAG CTCAAGATGT CTTTGTTGAA ACAGAACCTC CCGAAGTTAC AGTATTGGTT TTGGGGCTCC 003760 003761 ACACAGAGAA CACATCACGG AAGCTATAAT TGAGGAAGAC AAAGCTGTCA GGACGACACC AAGAGAGTTA GAAAGCCCAA 003840 003841 GAGTGGAGCA TTCTTCACCA TGATTCCACC TGACACTTGG CTGAAAGCAT TTTGCACTAA TTTGCTTTGT GCCCGTTCAG 003920 003921 ACAATCTAAA AAGAAAGGAT GGGGGGACAA CAAGTGTCTA TTACACAGAA TAAACAGCCT CTGGCAAATG AATACATTTT 004000 004001 ACACACTTGT GCTTTTGGAG GGATGGGGTA GTGATGAGGG GAAGGGGAAT GGAGGAGGAG AAGTCAAGGA TTAGAGGTCT 004080 004081 CTTCAGCATC TCAGGACTGC CTCTCTCTCT CTGTGGTCAC AGGGGTAGGT TTGGTCCACA TGGCAGACAT GAAACTCAAG 004160 004161 ATACAGCCCT GGCGTATACG GGTTGGGAGG CCAGTGCTGC CTCTGGTGGT CCCCCCAGAC CTGCAATTCA TATTTTGAAT 004240 004241 GGGTTTAAAG CCTACTTGGC AATTACTTTT ATCCTCTAAT GAAATAGATT TGAACCACTT TCCCTTGATT ATATTTTAAA 004320 004321 TGTTTACCCC CATATAAATA TAACTGCTCT GAGGTGGGAG GGGTTAAGCC TCTCCTATGA ATCAATTAAA GACAAAAAAA 004400 004401 AAAAAAAGGC CTTGAGCTTT TCGTCCAGAT AGCATGCAAG AAACACCAGG GTAAAGACAA AGGGAGCCAA AGAATCCATT 004480 004481 CTAGCCTCTG TAATTGGCTC CTATGTTGAA CTGTGAAGAG TTGGGACAAA AGCACAGGAC AGAGAAGATG GTCTAGCAAG 004560 004561 AAATACATGG TCTTTTAAAA GTGAAACACA GCATTTTTTg agggcagcca agatggccga ataggaacag ctctggtcta 004640 004641 cagctcccag cgtgagcgac gcagaagacg ggtgatttc |
Predicted Small Protein
Name | NONHSAT050732_smProtein_3089:3304 |
Length | 72 |
Molecular weight | 7827.3266 |
Aromaticity | 0.0845070422535 |
Instability index | 91.4183098592 |
Isoelectric point | 9.73480224609 |
Runs | 7 |
Runs residual | 0.0499629355078 |
Runs probability | 0.0490196078433 |
Amino acid sequence | MRSGHLKSVAPPSPSCSCFFHVKMPAPALPSTMSKSFPSPPQKQMLALCFWYSLKNLEPI KPQVSLLAIQI |
Secondary structure | LLLLLLLLLLLLLLLLLLEEEEELLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHLLLLL LLLLLEEEEEL |
PRMN | - |
PiMo | - |