NONHSAT050732

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT050732

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

4679 nt

Genomic location

chr15+:97954414..97976003

Exon number

4

Exons

97954414..97954508,97969937..97973129,97973586..97973792,97974820..97976003

Genome context

Sequence
000001 TTTTATAGGT TCATCAAAAT AAGATATGAT CAAGGTACAA AAGAGTTAAA GAAGCTATTT ATTTTAATGT TTCCTTGGAG 000080
000081 AGCACACTTG TTATTTGCTT GTTTTAACTT TCATGCtttt tttttttttt ttttgagaga gagagagaga cagtttcact 000160
000161 atgttgccca ggttggagtg cagtggtgca atcatagctc actgcaaccc gggacgccta gcctcaagtc atcctcccac 000240
000241 ttcagctacc cagctagtac ccaccaccgc acccagctct tttttaaaaa attttttata gagatggggt cttgctatga 000320
000321 gttgcccagg ctggactcaa actcctgacc tcagaagatc ttcctgcctc agctttccaa gttgcATCTG GCTATTTACA 000400
000401 GGCTTTCAAA AAGTGTTTGT TGTATCTCTA CCTTGTCCCA TCATTGTGTT AGATACACTC ACATTACAAA TGTTGTCAAA 000480
000481 AATGCTCACA TCATAAAGAG GAGAATTAAT ATGTGAAATC TGAAGGCAGA GAACAAGAAT AAGAGATTCA CCAAGTAAAA 000560
000561 CAAAAAACAT GGGTTTGAAA TAATGGAATA TGTATTATTA AAACAAAAAC ATTAACCTAA AGGCTAGTTC ATGGttttta 000640
000641 tttaattttg atttttatat atttGCCACA TGAGCTTTTC CCCAAATAGG TTACTGAGAT ACATAGCCAC AGGATGCACC 000720
000721 TGCCTAAATG CCCTGCAAAA CACAGTCATT TAATATTATT CTGTGGTTCT TGCGGCATTC ATCATACTGA GCCTTATGAT 000800
000801 GCAACTGGAA GAGTTAGGAC CCAAGACTCT ACCTTTCCAT TTTACCTATt gtgttgtttc ccatcactgc tgtaacaaat 000880
000881 caccacacac agtgacgtaa agcaatgcat attgttagct tacaattctg gaagtcagaa gtcagcaatg agtttcacta 000960
000961 ggtatgaaga attccaggtg atggtctgca aacctgagtt ccttctagag gctcttaggg gaaaaatcta tttccttacc 001040
001041 ttttccaact tctaggggct gcttgtgttc cttgcctcct ggccattctc tccaaagaca gcagcatctt caaatctgtc 001120
001121 tttgattccg cttccattat cgcatcttct ctagctcttc tagggaaact tttgatcaca ttgggcccaa cagacaatcc 001200
001201 agaatcattc gtctcaatgg ccttaactta ccgacatctg tgaagtccct tttgcaatgt gggacaacct gttcataggt 001280
001281 tccatggaat aggacctgga catttggttg gcgggGTGGT CCTCTCTTCT GTTTAAATCA CCTGTACTCA AAAAAAAACA 001360
001361 TAAGGCTTTG TGACAAATTG TATTTAAGAT GTTATAAATG CCAGTGTGTT CACTTTGTAA ACATTCAATA TTGAATGTTG 001440
001441 TTATGGCTTA TAATATCATC AATATTTATT GTATTTTTTG TGATGAACTG TAGGAAAAAA ATACTTTTTC CCTTCTTCAG 001520
001521 TCAGTCATTA GTCTCATTTG TCTCATTCTA GACTAAGGTT AGCACTCAAA CAAAAACTAT TTATTAGCTA ATGAGAATAA 001600
001601 TGAAAGCAGG CTATTTTGTA TATTAATAGC TTTGCATTAG GCATAATGAA TTTTATTCCA CAGGGCAAAA GGGATTTCAC 001680
001681 AAATGAAAAA ACTAGGAACC AATGTTCAAC ATATATCCCA GAAATTAGAT GGCTAGGATT GGCTATGTAC AAGAAAACAC 001760
001761 ACATTTTAAT TATCTCATTT TCCCCTCCTA TTATGTGACT TTCATAATAG Aaacatggca taatggaggt agcccaaggc 001840
001841 tttggaatta gaccaaccag agttcaaatt ctggttgttc tacctatcag atattttcat taaggtaatt ttttaaatgc 001920
001921 ttctcagctt ttgcaaaatg gatattataa tattcaccac actgagatat tataaagatt aagtaaaata atgtatgaag 002000
002001 atgactttac ataAATAAAC TGTTAATTTG CTTTGCTCTA TTGTCTTTGC TTTTAAAATA GTTGTATCTA CTTATATAGA 002080
002081 TTTGTCTTCA TGCTTATAGC TGAAATAGTT GAAAATATTT TATTCTATGA ATTGAAAAAA TAAAGACTAC TGGCTTTTAT 002160
002161 CTTTCACTAA AATGTAAGTT TCTTGCATTT TAGGAAAATA AATATGGCAC CAAATTTGTC TGCAGGCACA GAGATTACAT 002240
002241 TCCTCGAATG TTAATATCTA CCTATCTATA TATCCTATTT GCCGTCAGGT TCTTTTGAGG GATAATGATT TGTTTTAGAT 002320
002321 TATATTCTCA ATAAGTGATG AAATTTATAG ACTCTCCTTC ATAGTCACTC AGCAATGAAA CAGAGCAAAC AATCATTAAT 002400
002401 AAATGATGGA CGTTCTACGT AGGATTCTGT GTTCTAGGTA TGTATGCAAA AGATGATCTT ACTCTTGAGA GCCACTAGAA 002480
002481 CTCTTTGAAG AAAAAAAAAT GCTATTTGCT ATAGGGAAAT CTTTCTGGAA AAGTAATAAT TTCACCTTTG AGTCAGCTTC 002560
002561 CCTGGACTCT TGCCTCATAC ATCTTCAGCC AAGGTCAGTC CATTATGAAA ATCCACTCTC CCTTCCCCAT GAAAGAACAT 002640
002641 TCGAGGCATA CTTATTATAT TAACTGAATT GTTACATATG TATTAAAAGT TTATAGTATG TGTTAGCATT TATTTATTTT 002720
002721 TTGTAAGATG TCTTTCCAGG AATATATAAC CCTGGTTCAT AATATTGTGC CCTTTGTATC CAAGATTTGA TATATGTGAG 002800
002801 TAAACATACA ACTGTCTATC TGGGGGCAAG TAAATCGAAA ACCAAGAATC ATCTCAAGTG TTGGAAATCA TATGGTATAG 002880
002881 AATTCATTAC CATTTGTGAA CTGGAATGGG CAGCAAGATA TTTGAATAAA AATTAAACTA GTTCTATAAT TGGTGATTTG 002960
002961 AAATTTTTTG AAAAAGCCAC GGCAGtgaaa tagtttggat gtcccctcaa aatctcatgc tgaattgtaa tccccagtgt 003040
003041 tggaggtggg gactggtggg aggtgtttgg gtcactatag tgcgttttca tgagatctgg tcatttaaaa tctgtagcac 003120
003121 ctccctcccc ttcttgctcc tgttttttcc atgtgaagat gcctgcccca gctttgcctt ccaccatgag taaaagcttc 003200
003201 ccaagtcctc cccagaagca gatgctggcg ctatgcttct ggtacagcct gaaaaacctt gagccaatta aacctcaggt 003280
003281 aagtctttTA GCTATCCAAA TCTGATTCCA TAAGACTATT TTTGTCGCAA GTAACTATGG TGGCTATCCT CAAAAGATCT 003360
003361 GTAAGAAAAG CATTGCATAG AATCAGAGAA AAGGTTGAAC AATTTAATAA ATTGGAAAGC CAAATCCAAC CTAGGAATCT 003440
003441 CAGCAACAGT TATACATGGA TGTTCCTTCT GCCTCCCAGA GATGGCTGCC TGATACCTGG CTCCAAAGGC TTGTTTTAAA 003520
003521 CAAAGGTCAT TAATGAGTCT CCTGCTCATG CCACATATCA TTCATATGTG GCATGGTTGT AGAACTTCCT AATCTTTACA 003600
003601 AGAACCAAAG AAGCCTGGAA ATGCCCCATT CAGAAAAATA TGTTTGAGAC TTTGCAAAGC TCCTTTCTCT AATCCTTATG 003680
003681 ATTTCTTCTT TCACAGTGAG CTCAAGATGT CTTTGTTGAA ACAGAACCTC CCGAAGTTAC AGTATTGGTT TTGGGGCTCC 003760
003761 ACACAGAGAA CACATCACGG AAGCTATAAT TGAGGAAGAC AAAGCTGTCA GGACGACACC AAGAGAGTTA GAAAGCCCAA 003840
003841 GAGTGGAGCA TTCTTCACCA TGATTCCACC TGACACTTGG CTGAAAGCAT TTTGCACTAA TTTGCTTTGT GCCCGTTCAG 003920
003921 ACAATCTAAA AAGAAAGGAT GGGGGGACAA CAAGTGTCTA TTACACAGAA TAAACAGCCT CTGGCAAATG AATACATTTT 004000
004001 ACACACTTGT GCTTTTGGAG GGATGGGGTA GTGATGAGGG GAAGGGGAAT GGAGGAGGAG AAGTCAAGGA TTAGAGGTCT 004080
004081 CTTCAGCATC TCAGGACTGC CTCTCTCTCT CTGTGGTCAC AGGGGTAGGT TTGGTCCACA TGGCAGACAT GAAACTCAAG 004160
004161 ATACAGCCCT GGCGTATACG GGTTGGGAGG CCAGTGCTGC CTCTGGTGGT CCCCCCAGAC CTGCAATTCA TATTTTGAAT 004240
004241 GGGTTTAAAG CCTACTTGGC AATTACTTTT ATCCTCTAAT GAAATAGATT TGAACCACTT TCCCTTGATT ATATTTTAAA 004320
004321 TGTTTACCCC CATATAAATA TAACTGCTCT GAGGTGGGAG GGGTTAAGCC TCTCCTATGA ATCAATTAAA GACAAAAAAA 004400
004401 AAAAAAAGGC CTTGAGCTTT TCGTCCAGAT AGCATGCAAG AAACACCAGG GTAAAGACAA AGGGAGCCAA AGAATCCATT 004480
004481 CTAGCCTCTG TAATTGGCTC CTATGTTGAA CTGTGAAGAG TTGGGACAAA AGCACAGGAC AGAGAAGATG GTCTAGCAAG 004560
004561 AAATACATGG TCTTTTAAAA GTGAAACACA GCATTTTTTg agggcagcca agatggccga ataggaacag ctctggtcta 004640
004641 cagctcccag cgtgagcgac gcagaagacg ggtgatttc
[back to top]

Predicted Small Protein

Name NONHSAT050732_smProtein_3089:3304
Length 72
Molecular weight 7827.3266
Aromaticity 0.0845070422535
Instability index 91.4183098592
Isoelectric point 9.73480224609
Runs 7
Runs residual 0.0499629355078
Runs probability 0.0490196078433
Amino acid sequence MRSGHLKSVAPPSPSCSCFFHVKMPAPALPSTMSKSFPSPPQKQMLALCFWYSLKNLEPI
KPQVSLLAIQI
Secondary structure LLLLLLLLLLLLLLLLLLEEEEELLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHLLLLL
LLLLLEEEEEL
PRMN -
PiMo -