NONHSAT050868

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT050868

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

1459 nt

Genomic location

chr15+:99927816..99929274

Exon number

1

Exons

99927816..99929274

Genome context

Sequence
000001 CTCTTCCTTT CAAAGGATGG CATTTTAATG TTGCTTTGCT GCCAGATGTT CATCTGCTTG CTGTGAAGTG ATTCTTTTTT 000080
000081 TAAAATGTTT TTTAATGATG TAAGTTTTCT AAAAGGCAGG GCTGAATGGA GAACCAAGAA TTTGCTTGGT AGAAAAATTA 000160
000161 TTTTTTTTTA ATTTCAGACT TATCAAAAAT TTGGTTGAGG GAATTTTTAT TAGCTGCCCT GACTTTATAA TGCTACGCTC 000240
000241 TTAACAGTGC CAAAAATCCT ACATAGTTAC TGACAAATGT GTGATCTTTT TACAGTCACA ACACCTGCTG CCCGGAAAGC 000320
000321 ACACCGTCCA CGTAGAATGG AGAAGGCAGA AAGTTACCGT GTGTTCCCAC TGTATCTGCA CTGTTCTTAC TTCCTCTTGT 000400
000401 CCCTTTTCAT ATCTTGGTCT ATTCAGCCTT AACATTTCAA AGGCTTATAG TAAAATAGGA ACTGAAGATC TGTATCAAAA 000480
000481 TGTAACACTT TCATCCTTTG GAATAATTGA AGTTTAACAT AACCTCTACA TGTATATAAG TTAGCTGGTG AAAATGTGGC 000560
000561 ATGAAACTTC ACAATTGTGC TTCAGGCCTA AGTGACTGCT ACCTATGATT TAAGTGACAG TAAATGTCTT GCTACATTTT 000640
000641 TCTATTTCAT CCTCTACAAT CATATGTCAT GGAATGGAGC TATGAAATGT GCTAACTTGG TATTCAGGAT TCTCATTGTG 000720
000721 ATAAGGTGAT ACATTAGTTT TACCTTGTTT GAAATTTTAC AAAAATGCTT ACAATCCAGG CATTCTTTCT CTACCTATTA 000800
000801 TGAACTACGG TGTGTTAAAC AACAGCAGTG GGCTGGGCAG ACAACCTTTG GGCAGTCTCA ACCTTAATCC TTGGGTACAG 000880
000881 CACCTGAACT TAATTGATGA GAAGTGGAAC TTAAGTGGTT TCCCTGGTGC TGTTCATTAT GGAAATTTTA TGCTGGATTT 000960
000961 ATCGATGTCA TTCTTAATCT TTTGATACTA TAAAGGAGTC TTACCAACTG GAGAAAATTT GCCTACATGC TATATATTTG 001040
001041 AATTGTGTCC AAAGCTTTGC AGAAAAGCAA ATCTGAAGTT ATTATATATG TTGTTTTCTT GAGCAACAGT TACACTAGGT 001120
001121 AGAAAAGTAT TCACACAATA ATAGTAATGC AAAAAAAGTG AGCTACTTGG AAAGTATCAT CTCTGTTCAG GTAAGTTTAC 001200
001201 TTCAGTGAAC TCTTGTGTGG TTAGCGATAA GTTTTAAAGT CCAGGATAGC CTCATGAGCA TAGGCCTTCC TATGAAGTAG 001280
001281 TGCAAAGGGG GCCGATTTTA GTGGATTACC CTATCAGTGT TCTTCAGTAT GTCCAATTGT TATCATACCA AAAACCTTAA 001360
001361 TTACATAACA TTGTGTGGAT GAAATGCTGC ATCTTCAGTT AATACATGTT TTGAGCACAT TCTTAAAATA CATAATAATT 001440
001441 AAATGATCCC TATTCAAAA
[back to top]

Predicted Small Protein

Name NONHSAT050868_smProtein_623:694
Length 24
Molecular weight 2908.4136
Aromaticity 0.260869565217
Instability index 65.0565217391
Isoelectric point 4.50567626953
Runs 5
Runs residual 0.0103519668737
Runs probability 0.0389683801449
Amino acid sequence MSCYIFLFHPLQSYVMEWSYEMC
Secondary structure LEEEEEELLLLHHHHHHHHHHHL
PRMN -
PiMo -