NONHSAT050879
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT050879 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense,sense |
Length |
2222 nt |
Genomic location |
chr15-:100255906..100273649 |
Exon number |
2 |
Exons |
100255906..100258027,100273550..100273649 |
Genome context |
|
Sequence |
000001 GATGTTCGTA GCCAATCCGC AGGCGCGGTG GCAGCTgcgg gtcgcgggtc gcgggtcgcg agtcgccggt cgccggtcgc 000080
000081 ggCGGAGCCT GGGCGCTGAG CTGCGTTTGC TTTGGTTAGC TAGAAAGCAG GCCCATCATG CATCTGTAAG AAAGTGACTG 000160 000161 GAGTGTAGGC CCTGGCGTCT AAGCCGAGTA AGATGCCCtg tcaatctggg tcctctggga agcaagactg atgaaatgag 000240 000241 gagcaccaaa gctttaCACC CCAGCTATGT GCATTTGGGG CTGGGGCTGC CTGGGAAGAG CTCGTCCTCA GCCCAAAGCC 000320 000321 TGCAACAGCT GGGATCAGGG CTTACCTCTC ACAGACGGGG CTCAGCAACT TTCTGCGGGA TGAGGACACA AGCCCACTTG 000400 000401 ACCTGGAACG TCTGAAACCT CCTGGCCCCG TGGAAGATGG GAAGAAACAC TCCTCTTCCT CTCAGTTTTA CAACCGAGTG 000480 000481 GTCCTCGGGC TGCTTGTGAG CACCGGACGA CCGACCGAGC AGGCTGCAGC CAATCAGCTG GCACAGGGCT CCGACTGAAA 000560 000561 ATCATCTTGG CTGGTGCCAC AGAATCGGCC TGAAAACAGG ATACTGCCTA GAGCAAGGCA CCCAGGGGAG CCAAGCAGGA 000640 000641 AAATGTAATG AATTGACTTT AAGTAGCTGC AGCTGTGATT AGAGTATTTT TAGCCACAGG ACTCAACCAG CTTTCAAAAC 000720 000721 CTGCTAATAA GAGCCCCACC GTAGCCAGCG CAAAAATTTA GTTTTCAGTT TAACACCAGG AATCTGCTTA GCTAGGAGCT 000800 000801 GGCTTAGAAG GCACATCAGG AGAGAACATC TTCTACTGAA AGTTGAAGAT TTTTCATTTT CTAGCTGAAT TATGACAAAG 000880 000881 GGAGATGACC ATTAAGTGCC TGCCAGCATA CTGGGACGTA CACCTAACAC TCTGAAAACT CAATTCATGC CAGCACATCT 000960 000961 GTCTTCTGCT GCATCTAGCT CAGCATCATG TATGTATTTT GGGCAAAACT AATCATTTCA CACCCTAGAC TTTAAAGAGA 001040 001041 CCCAGAATCT AATGATAGCT AACATACCCA CCCCCTCTAA CAGGCTTTGG CGTATTTCCT GTGAGAAGCA GTTACTGGAG 001120 001121 GCCGAATGGA TTCCACTCAT CCACAGCACT GTGCATGCAA CAGCCAGATT AGGCCCCGGT GGGACTGCGT GGCCCACTGC 001200 001201 TTCCTATGGG CTCCAGGGCT GCCCAGCAGG GATGACCCGG GAGCCGACAA GGGGGAGGCC AGTGGGGGCG TTGGGACGGT 001280 001281 TTCCTTGACC CTGTCTCAAC CCAGAGAAAG AAGCCTGCAG GTGAAAAAGG TCTTCGTGAA AGGAATGAAA AAGGAGAGGG 001360 001361 CTTTAGGGGA AGGGGCTGCC TGGTGGCAAA GCCAGCGCCT TGTGTCCCCA GGCAAACATG ACAGAGTCTC GACGCACAGG 001440 001441 AAGAGCCAGT CCGTCTTTAC TGGAGTGAGT GCGGGAGACA AACAGTTTAC AACAACCTTT AGCATTGTCT TCACCATTTG 001520 001521 ATAAAAAGTT CACTATTATA TTTATTGTAT AATGAAGAAA AACAACACAT TCAGGGAAAA ATTGAGATTA ACTTATTTTT 001600 001601 CTTAAAAGGT TCATCTCAAG GATGGCAACA AAGTCCAGCT TGTGCCGCCA AACGGTTTTA CATGATCAAA CCGTGTACAG 001680 001681 CTTCTTGTGT GAACTGTTGA CTACAAACAT TTACCAAATA CATAAATCTC TTTTAAAAAA GCCATTTTAA ATATAGCAAA 001760 001761 GCAGTGTCTT CTTGCACAGC AAAGTGAAGA AAGTTTCTAC AGAGAAATAG AAGTTTTACA TTTGTAAAAT CTTTTTCACA 001840 001841 TTCTAATCAT CTAGCTTAAG ATCCAATGCC AGGAGTTTTC AGCTTCCTTA TTTACTATGT ATTTCTTGTG CGCATGATGG 001920 001921 TTAATACAGA AATTATGTTG ATGCATTACT AGTTATCCTT CTAGTTAAAG GAAAGGGTAA AACATGTATT GTTCTTGTAG 002000 002001 AACAAACCCC TGATTTAGTC TATAACAAAA TGGACATAAT TGGGCTCAAA AGATGGAGTT TTGATTGGGA CCACCTGTGT 002080 002081 ACACACAACA GTGACTTCCA CTCGCGGTGG AGTGGCCATT AGAGTACTGA GGAAGGACAG CTGTTGGAAA CTGTACTTTA 002160 002161 ACCAGTGCAA TTTAAGCTTT TTTTGCTTTT GTTCTTTAGT AATAAAATAC TTCTGGAGGG AT |
Predicted Small Protein
Name | NONHSAT050879_smProtein_266:382 |
Length | 39 |
Molecular weight | 4073.6191 |
Aromaticity | 0.0789473684211 |
Instability index | 47.2657894737 |
Isoelectric point | 7.72869873047 |
Runs | 5 |
Runs residual | 0.0410318559557 |
Runs probability | 0.00346228581522 |
Amino acid sequence | MCIWGWGCLGRARPQPKACNSWDQGLPLTDGAQQLSAG |
Secondary structure | LEEELLLLLLLLLLLLLLLLLLLLLLLLLLLHHHLLLL |
PRMN | - |
PiMo | - |