NONHSAT051078
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT051078 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intronic(AS) |
Length |
2395 nt |
Genomic location |
chr15+:100516686..100520979 |
Exon number |
2 |
Exons |
100516686..100516813,100518715..100520979 |
Genome context |
|
Sequence |
000001 ACTTGCAATC ATTCAGGGCA AAAACAGCAG CTGCCTGATA GAAGACTGTT TCAAGATGTT ATGGAATACA TGTTTGTGTC 000080
000081 TCTGCAAAAT GCAGATGTTG GAGCCGTGGA GGTGGGTGGC TTTGGGAGAT AAACCCTTCG GAGGCAGCTC ATGGCCTTTC 000160 000161 AAATTCATGC ATTACACATG CAGATTTCAG GGCTCCATCC CAGACCTCAG GAGTCGGCAT CAGGCGCATG GAAGTTTGAG 000240 000241 GAGTGCTGAG GTTGAGGGAT GAAGTCACAC AAGGAAGTTC CCGCCTTGAA CACAAGACAG GTGCTACAGC AACGCGACTC 000320 000321 CCGCCCTGCT GGTGTTGGGG GCACCTTGGA GGAAGCTGGC TGCACACTGG GATCTACTGC ATGCAGCTAC CTGGTGAGCT 000400 000401 TTGAAAAATC CCACACCAAT ACAATCCGAT GGTGGAGGGG GTCCCAAGAC CCAGAGCTCA GTGTTTATAA AGCTCTCCAA 000480 000481 GTGCTTGCAG TGGGCATTCA GAACCGAGGG CCTCCGACTT AACCTGAACC TCCTCTCAGG TCCCTGTGGA GAATGCAAAG 000560 000561 AGCTCTCTTT TCTTCCTGTT AAGGAGTAGT TGTGTCTCTG CACACACAAA TATGTATAAT TAAGCAAGAA CAACATCCAG 000640 000641 GCGCAGCCCT GACTGCAGTC TATAGCCAGA TGACAGGTGT GCCTAAAGGT AAGGGAGCAA AGGCTTTCAG TCAAAATTCT 000720 000721 TTTTAGAGGC CAGGTGCGGT GGCTCACGCC TGTAATCCCA GCACATTGGG AGGCTGAGGC AGGCGGATCA CGAGGTGAGG 000800 000801 AGTTTGAGAC CAGCCTGGCC AACATAGTGA AACCTTGTCT CTACTAAAAA TACAAAAATT AGCCAGGCGT GGTGGCGTGC 000880 000881 ACCTGTAATC CTAGCTACTC GGGAGGCTGA GGCAGGAAAA TGGCTTGAAC CCAGGAGGTG GAGGTTGTGG TGAGCTGCGA 000960 000961 TCGTGCCACT GCACTCCAGC CTGGGCAACA GAGCAAGACT CCATCTCAAA AAAAAAAAAA AAAATCACTT ACAAAAGCAA 001040 001041 TCTGGTAAGT AGTTGTACCC AGAAACTGGG AGTCCACACA AATGTGGTAG ATGAAGGGAA AAGCCAACGT TCCCAATGCG 001120 001121 GAACAAAGCC ACGGAGCCGA ACGCTAAACG CAGAGCGAAG TCACGCCAAT CCCCTGCAAA ACCACGCGAG TGGTCCACTG 001200 001201 GGAGCGGGAC AGACTGAAAA AGGGCAGCAT TTGAGTGAAG TCAGATACGA CCACGTGCCC TCTGGCAAAC CGACAGGCGA 001280 001281 CTCAAAGTGG AGCTGGTGAC GATGAGACCA ACACTACAAT CACCAGGTTG CACCACACAA AACTGCTTCT ATTCAACTGT 001360 001361 TTTGACCTCA AAGCATCCAT TTCATAAGGC TCCATTTTAT AACATACCAA GGAAAATAGC AACATTTCTA AATTTGAATG 001440 001441 TTTATAATGC ATAACTTTAA ATATGAATGT ATAACTACAT CAATAAGTTA CTTAATGGCA GGCATTTGAT GAGTCCACTT 001520 001521 ACATCACTAG AGACTTTTAT ATCTAAATGT GTTATGTAAT TCAAAAGAAA CCCTGCTTCC TGGGAAAACG GGATTACCAT 001600 001601 ATAATCAGGG TTAATTTCTG TGACTATTTG GCACGTATGA GGCCCACTTA AGAACAGAGG GCTGGGTGCG GTGGCTCACA 001680 001681 CCTGTAACCC CAGCATTTTG GGAGGCTGCA GTGGGCAGGT CACCTGAGGC CAGAAGTTCG AGACCAGCCT GGCCCACATG 001760 001761 GCAAAACGCT GTCTCTACTA AAAATATAAA AATTAGCTGG GCATGGTGGT GAGCACCTGT AATCCCAGCT ACTTGGGAGG 001840 001841 CTGAGACAGG AGAATCACTT CAACCCAGGA GGCAGAGGTT GCAGTTAGCT GAGATTGCAC CACTGCACTC CAGCTTGGGT 001920 001921 GATAGAGCAA GACTCTGTTT CAAAAAAGTA AAAACTAAAA ACAGAGAGAT ACACCTGCTG CCTGCCGACC TGTAGGCAAC 002000 002001 ACCAACATCC CTTTTCTCTT CAGATCTTTT CTCGGGCCAT TGGCCACAGT GCCGCCTCTA CTGCAAAACA TGTACCCAGG 002080 002081 AGGGAAAGGC AGGCAGCCTC CTATTCCTTT CTGGAGAGAG GAGCATGGGG CAGGGGGCTG TTGGATTTCT GGGGAGGAAA 002160 002161 CTGCACAGAT GGATGGAGGA ACCCGCCTCA CTCCCCTGCA TCTCCTGAAG AGGTGTCCGT GCCCTGCCAG CTGGGGAGTC 002240 002241 AGTCCCACTG AATCACTGCT GTTAAGGGGC TCAGCCCTGC AGGAGTGCCA GGAAGGGCTT CCGTTTCTTC TGCGAGTGTT 002320 002321 GCTGATATGT ATGTGAAAAT CACACAGGGG CAAGGGCTTC ACCCTGTGCG TCTATTAAAA CCAAGTGCAG CATTG |
Predicted Small Protein
Name | NONHSAT051078_smProtein_2069:2335 |
Length | 89 |
Molecular weight | 9634.1576 |
Aromaticity | 0.0681818181818 |
Instability index | 70.3159090909 |
Isoelectric point | 6.70147705078 |
Runs | 11 |
Runs residual | 0.00636363636364 |
Runs probability | 0.0482728718023 |
Amino acid sequence | MYPGGKGRQPPIPFWREEHGAGGCWISGEETAQMDGGTRLTPLHLLKRCPCPASWGVSPT ESLLLRGSALQECQEGLPFLLRVLLICM |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLEEELLLLLLLLLLLLLLLHHHHHLLLLLLLLLLLLLL HHHHHLLLHHHHHHHLLLHHHHHHHHLL |
PRMN | - |
PiMo | - |