NONHSAT051169
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT051169 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
2663 nt |
Genomic location |
chr15+:101835624..101845942 |
Exon number |
2 |
Exons |
101835624..101835934,101843664..101845942 |
Genome context |
|
Sequence |
000001 CGGAGTCTGG AGGACCCCTG ATTCCAGACG TTGGTGTTTA AAAGTTAAGG CGAATGTGGA AACACCCGAG GGGAACTTTC 000080
000081 TCATGCATTA GCGCACCTCG AGGTGGGAGG GGAAGCGGTG ACTGTCCTCC CTCCACCAGC CGTCGCGGGA ACCCGTGGGG 000160 000161 TTCAGTGAAG GGTCCAGCAG TTCAGGTGCC CGCCCCGGGC CTGGGCCTTG GCTCCGGGCT ACAGTGTGAG ATCCCGGGCT 000240 000241 AGGTGGCCCG CCTGGGGCAG GTCGCCGGGA CAACCCCACC GCCCCGCAAG TCCAGCCCGG CCTCGGGCAC GCCAAAGGAT 000320 000321 TCCTAGCAAG TACAAGCTTC TGACTTCACA GAGAGGCCAT GGTAAACATC CCAAGGAGTG CATCAGCCAT GGGTTCAGGG 000400 000401 ATTTCAGCCA CTGCATAGAA GACAAGCTGT AACCTAATTC AATCACACTT GGCAGCAACC GGTGAAGAGG CAGTCTGGGC 000480 000481 TCTGGGGAGC TCCCCCGTGA CAGATGGAAG GGGCCCCTAC ATCTGGAGAG GCTCTAGAAC CTCCTCCCAG TGAGGCTAAC 000560 000561 GTGGTCTGAA GGGGTCTCTT TGCCCAGTGA CATTCTGGGG TTGGGATCTG GGATTTCCTC CATTGCTTCC TTACATCAAC 000640 000641 ATTTGCTAAA GCTCAAAAGA AGACCTTCCA CGTAATGACA TCAAACAGAT CTGAAACCAC AGTTAAAGTA ACGTCCACTT 000720 000721 AACACTTGGT CAGCACTCAT GTTTCATTTT GTGTGCCGTG GAAAGAAATA CAGGCTCCTG TGCCATGGGA TGTTAACTCT 000800 000801 TTTATTAATT TAGGGTTAAC ATTGTACTTG CTTCATTGAT TTCTCTTTCA GAGTTGTAGA TTCAATAAAC AACATCTGGG 000880 000881 TTCTCTCCAG CTCACAGGTG ACAAGGCAAA TGCACTGTCG TCAAACAGGG GAGCAGGACA ATATGGAGAA AGACGAGGTC 000960 000961 GAAAAAATTT AAGGCAAATG TTACTTCCCT ATTCAAGGGA ATTGATCAAG CAGATCTGTG CATTTCAATG AAAATATATG 001040 001041 AAATATTTGT CAAAATAATT AACATCGGTA AAAATTAGAA CATGTAGCTT ATAAAATGCC TACACAGGTT TGGCAGAATA 001120 001121 AATCCAACTG TGTCATGTAG GCTTGTAATA TACACAGACA CAGGAGTTTC CACCTTAAAA ACGAGTCTTC TGAAGGGCAG 001200 001201 AGGCCAAATG TATTTTAAAA GCAATTCCAT AAAATGGGAA GTGATGGATG ATTAACAATG CATGGCTGGC TTTACATTTT 001280 001281 GTTCAGAGGA ATTGCTTGGC CATCGGGGTA CCTTTTGGCT GGCCACAGAA TGCCTCCTGT TGCCTCTCCT CAGAAGGCTC 001360 001361 TGCATCAGGT CGAGGTGGTC GTTCAGGCCA TGAGACTCCT GAAGACACAG ACAGAACACG GTAACAAGGA GAGCTCGGCT 001440 001441 TGCTCAAAGG AGAGCGCTGC GGGGGATAGA ATCTTCTGGT CTGGCTTTGG AATTGGACTT TCTAAGCCAC TGCTGCAGTT 001520 001521 TCAGAAGTAG CTGACTATGT AGAAATAGAT ACTCCGGCCC CAGTGGTCAT ACATTTTATG CCCTCAAACC TATCTTATTT 001600 001601 ATAGTCTGAC CAAACCGTCC CCAGACTGCT CAGTGGCAGG CAACGAGCAG GTAGACTGCT GGCCCTTTGT CACATGTGAG 001680 001681 GATGGCCCAG GGTTCGCCAG CTGGGCCGGG GAGATTTACT ACACAGCCGC AGAAAAGCAC GGGGAGAAGA GTGATGTGTG 001760 001761 ATGCCAAGCG CCTTTCTTTT CTGCTTTGGT CTTGAAGATT CAGTAAACTT ATGGTCCCAG AAGCTGCTCC AAAGCCAGAG 001840 001841 CTGTGGATTC CCAGAATTCA TTTTGTTCCT GTTAGTTTGT CCGAAGACTG GAGCCAACAA GCAGCATTTG AGAGGATATC 001920 001921 ACCATTTTAG GAACACCTCC TTAAGAGCCA CCACCCACCT GGCTTGGGTG CTCAGAGATG CTGCTCCTGG GGAGATAAAG 002000 002001 CTGTCAGGTG CAGGGCGCCG CTCCTGAAAC AGACTCTGGC CGACAGTCTG GAGGAAGGTG GACGGATGGA TGGATGGGAG 002080 002081 TGCCTGCCCT CTGTGGGCAG CTAGGCACCC TTACCCGGCC AGGAGGCACG TGCGGCAGCA GAACTGAATG AAGAGCTTCC 002160 002161 GTTCGCACAG CCGGTTGGAC TTCACCATCT CGCAGAATGT CTCGTCAGCT GGGGCCCCGC ATCAGGAAAG GCAAAAGAGG 002240 002241 GAAAGGTCAG TCTTCGGTGC CTGTGAAGAT TGTTTCAAGG CCGGGCGCGG TGCCTCATGC CTGTAATCCC AGCACTTTGG 002320 002321 GAGGCCGAGG TGGGTGGATC ACCTGAGGTC AGGAGCTTGA GACCAGTCTA ACCAACATGG TGAAACCCCG TCTCTACTAA 002400 002401 TAATATAAAA ATTAGCTGGG CATGGTGGTG GGCACCTGTA ATCCAAGCTA CTCGGGAGGC TAAAGCAGGA GAACCACCTG 002480 002481 AACCCAGGAG GCAGAGGTTG CAGTGAGCTG AGATCATGCC ACTGCACTCC AGCCTGGGCA AGAAGAACAA AACTCCGTCT 002560 002561 CAAAAATAAA TAAATAAATA CATAAATAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA AAAAAAAAAA 002640 002641 AAAAAAAAAA AAAAAAAAAA AAA |
Predicted Small Protein
Name | NONHSAT051169_smProtein_1760:2026 |
Length | 89 |
Molecular weight | 9876.3078 |
Aromaticity | 0.113636363636 |
Instability index | 73.3943181818 |
Isoelectric point | 9.64471435547 |
Runs | 14 |
Runs residual | 0.0277272727273 |
Runs probability | 0.0435687788629 |
Amino acid sequence | MPSAFLFCFGLEDSVNLWSQKLLQSQSCGFPEFILFLLVCPKTGANKQHLRGYHHFRNTS LRATTHLAWVLRDAAPGEIKLSGAGRRS |
Secondary structure | LLLLEEEELLLHHHHHHHHHHHHHHHLLLLHHHEEEEEEELLLLLLHHHHLLLLLLLLLL HHHHHHHHHHHHHHLLLLEEELLLLLLL |
PRMN | - |
PiMo | - |