NONHSAT051872

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Labs working on this lncRNA

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Basic Information

Transcript ID

NONHSAT051872

Source

NONCODE4.0

Same with

,

Classification

antisense

Length

2162 nt

Genomic location

chr16+:783055..785525

Exon number

2

Exons

783055..783159,783469..785525

Genome context

Sequence
000001 ATTTCAGAGC CAACAAGGAG GTATTACTGA GCGCCACCTG GCTGCAGGTC CCCAAGACAG GCCAGCTGCA AATGGGCCCA 000080
000081 CCTGGCTCCA AGGGGAGAGA CGAAGTAAGG TGGCTGAGAC GGGACCTGGA ACTCAGCCAT CCTGCAGCCA GGCCGGACCC 000160
000161 CGAGGGACAG TGAGCCTCAC TCCATTTCCC AGCAAGCCTC CTGCCGGCTC TGCGGATGTG TCCCTGGACA GGACGGGCCC 000240
000241 TGGCTGTGAC AGAAAATGAC ACTGACCCAT TCCCAGTGTG CCTGCGCTCC CTAACAGCCA AGTCCAGCGG AGGAGAAGTG 000320
000321 GCCTTCCCAC GGCTCGGGCC GTCTCACTGC ACAGCAGCCG GGGAAACGGA TGTCACGGGG GAACCAACCA GCTCCAGCCC 000400
000401 CGGGTGAAAA TCCGCGTGCA GTCAGGCAAG AGGTGCCGCA GGGGACATGG GCGCTCGAGG CCCAGGCACC ACCGGGGCCG 000480
000481 CCCTCGCCCT CTCCCGCCCC ACGCTGGCTG AGTGTCTTCA GGCTTCTATC CCGCTGGGCC TCAGGTGGGG GTCGTGCTGG 000560
000561 GCATCCTCGT GGACCTGGTG GCCGGAGGGG TGGGCTCCAG GCCCGGACTG CCCAGGGCCT CCTGCTCCCT CAGCCTCAGG 000640
000641 CCTGGCTGCC TCTGGGTGAG CAGTGAGCAC CTCTGGATCA GAACGAAGCC CTCTGCTGCA GAAGAGGAAG GGCCTGAACC 000720
000721 AGGAGGGAAC AAGGGTGGAG GTGTGCTGGG GAAGGCCGCA CAGCACAGCG AGGACTCTGT TTCCTGCAGC CTCATGGCAA 000800
000801 GAGGCCAGCA AAGTCACTTC TGGCCGCTCC CCAGCCTGAG TCTGGGGCTG GCCCAACGCC GTTACCTGCT GCTGGGCGAA 000880
000881 GAAGTCCTTG ACCAGGGAGC CCATGACCTG CTGCGGGGAC CGGGCGGTGC TGATGTGGGG GAGGACGAAG CTGCCGTGAG 000960
000961 TCTTCTCGGC ATAGCAGATC CAGCCTGAGG TGACAGGGGG CACACGGGGC TGGCGGGGGC ACACGGCGGC CCCCGCACCC 001040
001041 ACAGGCAGCA GCACGACATT CTGGGGGCGG GCCCGCTCAT ACAGGAGATC ATGATGACAT TAAAGAGTGC TCATTCCTGT 001120
001121 TCTCCCCACC ACCACGCGGA GCTCGGCGTG CAGGCGACAC CGCCTAGGGA CCTGAGGTGA CTGCGCGTGG CTCCCACGGG 001200
001201 AGGGCAGCCT CTTCTCCAGA AAAGGCCATT TGTGCCAACA TTTCCAACCC GTCCCGCAAA ACCTGCTTGC GTCTCCACCC 001280
001281 CCCATGCCCC CGCCTTGTCA TTTGTGTCCA TATCACCTCA CGTTTCAACT GCACTTGAAC TTGACTCTCC CACCACCCGC 001360
001361 ACCATGAGCA CACCTGGGCA GGCAGAGGCC AGCAGGGGCA GCGCCTGTCT GCAGTCGGCC TGTCCTCGGA ATCGCCGCAC 001440
001441 AAACTCTCGC TGGCTCTCCA GGAGGCTGAA GTGCCTTGAG AAGGCGGTGT CGAAGACGAA GTGCACCCCT GGAAGGTGAA 001520
001521 GGTGGGTGCC TGGTTAACCC CATGCGGGAC GCCCACGCGA GCACACGCCG GCGTGTGGAC CACCATGGTG CTGCCAGGGC 001600
001601 ACGTGTGTCG CACCTGCTTG CCGTGCCAAA GCCCCGGCCC CACCGTGGGG ACCTCCTAAA GCCACGTTGC GCCAAAGCCC 001680
001681 CAGCCCCACT GTGGGGACCT CCTAAAGCCA CGTTGCCTCG GCATCCCCTG TGAACCCAGG CCTTGGTTTC CCACCCCAGA 001760
001761 GGCAGCCACC CAGCAGCTCA GTCCTCCACC CTCCCAGCTC TTCAGCGTGG CTGGTCCAGG GAATTGCCAC GTGCGCTGCT 001840
001841 CCCGGTGACC CTCCCTAGGG CACAGCTGGA CGCAGCCTGC TGGACTGGCC CCTCGGACCC TGACTGTGCA GACCTACCAT 001920
001921 AGTGGCCACC CCTCACACAC AGCAGGACTC CTGGAACACG CCAGCCAGCT CCAAGCCCAG CCATTAGAAC TGCTCAGTAA 002000
002001 ACCTGCCTGA TCGTGCCCTG GACCCAGCAG AGGCACCCGC GTGTGGGTCC CTCTCTCTCT GCCTGACTTG TCATTCCTCC 002080
002081 CTCGCGTAAC CCGTGGTCGG AGGACTCGCT GTGCCCCACT TGCCCGTCAT CATCATCTCT AAGTAAAAAT CTTTGAACTT 002160
002161 GC
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Predicted Small Protein

Name NONHSAT051872_smProtein_446:658
Length 71
Molecular weight 7003.847
Aromaticity 0.0857142857143
Instability index 53.9028571429
Isoelectric point 5.93072509766
Runs 7
Runs residual 0.0448373408769
Runs probability 0.0307366189719
Amino acid sequence MGARGPGTTGAALALSRPTLAECLQASIPLGLRWGSCWASSWTWWPEGWAPGPDCPGPPA
PSASGLAASG
Secondary structure LLLLLLLLHHHHHHLLLLHHHHHHHHLLLLLLLLLLLLLLLLEELLLLLLLLLLLLLLLL
LLLLLLLLLL
PRMN -
PiMo -