NONHSAT051933
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT051933 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
3223 nt |
Genomic location |
chr16+:1355548..1359414 |
Exon number |
2 |
Exons |
1355548..1357822,1358467..1359414 |
Genome context |
|
Sequence |
000001 AAtttttttt tctttttatt tttaaatgaa gtctcgttct gttgcccaag ctggagtgca gtgacgccat ctcggctcac 000080
000081 tgcaacctct gcctcccgtg ttcaggagat tctcctgcct cagccttcga agtagctgga attacaggcg tgcaccacca 000160 000161 cacccaacta atttttgcat ttttagtaga gacagggttt caccatgttg ggcaggctgg tctcaaactc ctgagctcaa 000240 000241 gcgatctgcc ctactcagcc tcccaaagtc ctgggattac cagcgtgagc caccgcgcct ggccCGAGGC TGACttttga 000320 000321 gctggttttt gtgcgtgctc cggggtaagg gtccaccttc actctactgc aGAGGCCCTT ATTCCTCTGG GGGAATCGGC 000400 000401 CCTCAGTGAA GAGGCCTCTG CTCTCAAACC CCTGTGCAGA GCCTGGCCCC AGCAGGCCCC GGAGGGGGCA CCCAGGGCAC 000480 000481 TGGAGGTCCC GCCCTACCGC AGGCAGCTCT GCATCACACT TCCTGCTCCC CTCCCAAGGG GACCAGGGCA AAGGTGGGCG 000560 000561 CGTGCCTGGC ACAGTCAGCC ACAAGCCTTG CCCAGGATCT TATAGTTACT GATTCAAACC CCCCACCCTC TCCAAGCCTC 000640 000641 AGTTTCTCCT TTGTACCCAG GGAGCTGGAC CCAACAAGTC CCCTCTCCTT GAAAACGTGT GCCAGGTGCA GGCTGCTCAA 000720 000721 AGGACACTTG TGGGCTGAGG ATGCACAACT GAGGGAGCCT CTTccctccc ccacctgctc catgcccctc acccccacct 000800 000801 gctccatgac cctcacccct acctgctcca tgtccctcac cctcacctgc cacagcctcc ccaaacccca gcccctccTG 000880 000881 GCACTACTTC CCACCAGGAC AGGAATTCTC TAGATGCCTG AGCCATGTCT CCTCAGTCCC TCACCACACA CACACAGGGA 000960 000961 ACCAGGGCCT TGTCTTACTT CTCCTGTTCC ACAACCTTCT ATGGCTCCCA TGGCCCACAG GTTCAGGCCC AGGCCCTCCC 001040 001041 CAGCCACACA CCACATCCAG TCAGTCTCCC CAAGCCCCAC TCATGACAAG CCCCCCACCT CACCAGCCCT GCCCTCTCTG 001120 001121 TGCCTGAGGC TGCAGCGGGA TCCACCGAGG CCCGTGGCTG TCTTGCTTTT CTTCAGCCAC GGCTTTTACT GGCTGACGCC 001200 001201 TCCCCACACA GCCCTGTGCT GGCATCTTCG CCAGAAAGAT GGCGTTGGAA CCTTAGCCCA TGTCAGGAAG CCAAAGGGCC 001280 001281 ATATCCCTCT GCCAGGCTTG CCCAGGGGGC TGGTTAAGAA TGCAGATTTC Agctgggcgt ggtggtccac acctgtaatc 001360 001361 ccagcacttt gggaggccga ggtgggcgga tcacttgaag tcaggagttt gagaccagcc tagccaacat ggtgaaaccc 001440 001441 cgtctctatt aaaaatacaa aaattagccg ggtgtggtgg tgcacgcctg taatcccagc tactcgggag gctgaggcag 001520 001521 gaggatcgct tgaactcagg aggtggaggt tgcagtaagc caagatggcg ccactgcact ctagcctggg caacacagtg 001600 001601 agactccatc tcacaaaaaa aaggaaaaaa aaaaaGCAGA TTCCCAGGAC CTCAAGGCTG GGGGCCAGGA CAGCAGGTGT 001680 001681 CTAGACAGGC CACGGAGGCT CTGAGCCTGG GAGTTGCAGC CAGGCCAGGC CCCCGCTGGT CTTGGTGGGA CAGGGCTGTG 001760 001761 CATGGCTTCC AGGGACTGGA TTCTGGGGGA GGCTGCCCCT GCTGCCCTGG ACCCACATCC CCACGGCTGC GCCTCCCAGG 001840 001841 CAGGCAGACC CAGGGTGTGT GGCTGCCCCT CCTGCTGCAG GTGCCTGACA GGGAAATGCC CGCTGGGGAC CCTGTGGGAG 001920 001921 GTGGTGGGGG AAtgagtgag ggagggaggg agtgaatgag tgaaggaggg aatgagtgag tgagggaggg aattaatgca 002000 002001 tgagtgaggg agggaatgaa tgaatgaggg aggaagggaa tgagtgaggg agggaatgaa tgagtgaggg agggaatgag 002080 002081 tgagggaggg aatgaatgag ggagggaatg aATGAATgag ggagagaggg agggaatgag ggagggaggc aatgagtgag 002160 002161 ggatggaATA AAtgagtaag ggagggaatg agtgagggag ggagggaatg aatgaatgag ggagggagtg aatgaatgag 002240 002241 tgagggagga agtgaatgag ggaggaaggg aatgatgagg gagggaatga gtgagtggga atgaatgagt aagtgaggga 002320 002321 gggaatgagt gagtgagggt ggcaatgaat gagtaagtga gggagggaat gcgtgagaga gggaaggaat gattgagtga 002400 002401 tggagggatc gaatgaatga gggagggagg gaattagtga gggagggagg gaattagtga gtgagggagg gaatgacgga 002480 002481 gtaggggagg gaatgaatga atgagtgagg gagggaatga atgaATGTGG TCACTCCCCG CGGTCCCCAA GCACCCGGAC 002560 002561 ACCGTGACCT TGGCTGCGGC CCCGCCGTCG GCGAAATGCG GGCGGGGGGG CCGGGAGAGC CCGGGGGCCA GCACGGTCGC 002640 002641 GCGTTGGCGA ACGGACTGTC CCGCGCGCTC GCGGGTCTGG GGGCCTCCCG ACCCGGTCCT GCTTGTTGCG TGGGCGGGAG 002720 002721 GGGGGACCGG AAGcgcccct cccccacggg ctcgccccgc ccccgccgct cgcggtcccc cacgtcccgc ccgcgccccg 002800 002801 gcccAGGGCC AGCCCCCGGT TTAGGGAGCA TCCACACTTC TCCTCCCGTC GGTCATGCTC GCATTCGGCC TTTTGTACGG 002880 002881 GGTCAGCTCA TTGGGCGGAT GAGAAGGTGT CCCCGCCTAC CGCCCCGAAC TGGCCAATTG CAAGGGGTTT CACAGGGCGC 002960 002961 TGAACTCGCG GGAGCGTCAC CGTCCTGCGA CGCTTCAGAG GATCCTTAGG CCTCAGTGGT CTTTGACCCC CGGCCCCAGG 003040 003041 ACCTGACCCC AAGGAAACCT CCGGGACCTG TGGCTGGAGA GGTGACCGCC AGGCATCCGG GGAGCCTTTG GAGATCTCGG 003120 003121 CTTCCTTTTT CCCCCGCTGC TTGCCGGCGT GTCCTCGGGT GGACGCGGGC AGCCCGAAGG GGAGTTTACA GACGCTCCCT 003200 003201 CACATCGGGG ACGCGGCTCC TTT |
Predicted Small Protein
Name | NONHSAT051933_smProtein_1259:1357 |
Length | 33 |
Molecular weight | 3326.8561 |
Aromaticity | 0.03125 |
Instability index | 63.265625 |
Isoelectric point | 10.4104614258 |
Runs | 5 |
Runs residual | 0.0353954081633 |
Runs probability | 0.0469881646352 |
Amino acid sequence | MSGSQRAISLCQACPGGWLRMQISAGRGGPHL |
Secondary structure | LLHHHHHHHHHHLLLLLLEEEEEELLLLLLLL |
PRMN | - |
PiMo | - |