NONHSAT052157
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT052157 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2540 nt |
Genomic location |
chr17+:20978868..21020917 |
Exon number |
5 |
Exons |
20978868..20980034,20982000..20982064,20988073..20988112,20992754..20993985,21020882..21020917 |
Genome context |
|
Sequence |
000001 GCTGCAGCTG GGCCTGGAGG CAGTGGCTCT ACAGCAGCAG TGAGAGCCGA GCTGTGGCAG ACACATGCTC TTCCCCTGAC 000080
000081 TCACGGCTGC CCAGTTCCCT CCAGCGAGGC TGCTGACCTA TTTTTCTATT AGGAACAACC AGCCAATGTG ATAATGAGGA 000160 000161 AAATGTATTC TGGCCCCTAt gaagtttagt gaagcccgaa tgaagtggag gaggccacgg agatgcacga ggaagagcat 000240 000241 tccaggcaga gggaacagcg aggacaaaag cccccgggca ggaatgggtg tgcaagcctg agatccaaca tggcggAGAG 000320 000321 CAAGCCGGAA GTGCTGCGCG GGGATCCTAA GGGAGCACTG AACAGGACAA GCTCAGTTTT GTCCCTCAAA CCTCCACAAT 000400 000401 CAGGTAAGTC AGTCGGCCTC GCATAAGATA TATGTTTTCC CCACCAATCT CCATTCTGAG GAGTGGAGTA GAAACTCCCT 000480 000481 CTCCTCTCAT GAAATGTTGA GTATCAGGGA GCAAGTGtgt gctaaaaagg gttacctcgg tggaactagg ttgctcaaat 000560 000561 cctgaacatt ccgaaggaag gactggcccc tgaccagctc tggggagcta acttctgggt ctttggaata tgcctgagga 000640 000641 gagcaccttt gtgacctgag acttcagccc tgcctacacc ttatgctaac agtgtggttt atggggaaga cctgttttta 000720 000721 tttgctggga gccctgggcc atgctgtatc tctttgactt ctggatgggt ggggaactga ggaataaatt gctaaggcca 000800 000801 gtcatgtaga tgctccatgc ctatatgact gacctccaat aaaaatcctg gcaccaagac ttgggtaagc tttcctcatt 000880 000881 gacagtaatt ggtgtgtatt attgtcacac gttgttgctg ggaggactaa gtgttgtcca tgtgactccg cagagaactc 000960 000961 ctggaagttc accccggttt ctcctgaact ctgccctatt gtcccttttt cctatgctga ttttaatctg tattcttttt 001040 001041 atccccaagt tctggcaagt ctttgatgta ttcttttccc ataataaact gtaactgtga gcataacagt ttttccaaat 001120 001121 tctgtgagcc ctcctagcga atcatcaaac ctgagagtgg cctggggagg ccttaatata atcaactaaa tgtgctttcc 001200 001201 ctctaatagg tcgcagagcg gcttggcact cagtgtcttc cagccccctc gtttctgatg agaagttagc agaaaggaag 001280 001281 catgctctat ggttccattt aaacaaagtt ctagaagagg ctaaataaat ccatgttgga aaaaaatcag gacagtgaat 001360 001361 tgctttggga gattgtcaat gaagactgac cagaaggggc atgaggacag tttctggggt tatggtagtg ttctGCAAGA 001440 001441 ACTCCATGAG CCAGTCTCTG GTAGCCTCTA ATCTGCTTTC TGTCAAATTC ACAGAGACAG AAAATCAGAT TAGGATACAA 001520 001521 ATCTACAAAT TTTGTAGAGT TCTtgccatt tatctatttg ttttctgtat gtcttatatg gtttttggtt cctcagttcc 001600 001601 tccattactg ccttttttgt atttagttga ttttttgtaa tgtttcattt tgatttcttt cttctttcct tttctgtctt 001680 001681 tttttagtaa ttgcctaagt ggttgccttg taaattacat atgacatctt aaacttgtaa caacctagtt tgaaaaatac 001760 001761 caccttagtt taagtagtac ataaacactc tcgtcctatg tccaacagta aaagttaatg gaagattata gcaacccaat 001840 001841 aaaaatgaga tcactaaggc ctcagatcct tcaggaataa aattttaggt tattcctcca gatacagaac gctgatcagc 001920 001921 tgagagggtg gctgagggca aaggtagcaa tgaaacagat agtgaaagaa ggaagttata aatattaatg atggtctctg 002000 002001 actagttata gtaaagaaga ctgtagtaaa tatgcatact ttagtctgtt tgtatttgta tatatgaatc aatttcagtt 002080 002081 ttatttctct tttctccagc tattttacat aaggaaagtg ggtggtgatt aacctcagag tctccaggga cagactatcc 002160 002161 aggactgtgc ctgaaataga agaggaatta acatcataca gaactgaata cggtgactga ggggagtttg tgtctcccct 002240 002241 tttaggaaag aagatgagaa taagtatgaa ggagagtcat gtactgtaca ttaagcaaaa gcatgatgct gttattTGAA 002320 002321 ATGTTAATTA GAGGTGCCCA CTAAAAACTG CTCAGCAATT TTCTTGGAGA CCTCAGTGCT CATGTTATTC TTTCCTCTAT 002400 002401 CTTATGTTTT CCTCTCTCCT GCCCTTTTCA GAAACAGTCT ACAGCAGAAG CCATTGACCC TGTTCAAATT ACAGAAGAGC 002480 002481 CCTTTTTGAA TTTATGAAAA TCCTGTGGAA GCTCTGAAGT TGAATATACA TGAGAAAAGC |
Predicted Small Protein
Name | NONHSAT052157_smProtein_1400:1639 |
Length | 80 |
Molecular weight | 9075.8508 |
Aromaticity | 0.151898734177 |
Instability index | 50.6215189873 |
Isoelectric point | 8.95733642578 |
Runs | 12 |
Runs residual | 0.0116178255592 |
Runs probability | 0.0585806394631 |
Amino acid sequence | MRTVSGVMVVFCKNSMSQSLVASNLLSVKFTETENQIRIQIYKFCRVLAIYLFVFCMSYM VFGSSVPPLLPFLYLVDFL |
Secondary structure | LEEEEEEEEEEELLLLLHHHHHHLLEEEEELLLHHHHHHHHHHHHHHHHHHHHHHHEEEE EEELLLLLLLLEEEEEELL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHH HHHLLLLLLLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTT TTToooooooooooooooo |