NONHSAT052157

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Annotated Information

Transcriptomic Nomeclature

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Function

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Regulation

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Expression

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Allelic Information and Variation

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Evolution

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Basic Information

Transcript ID

NONHSAT052157

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2540 nt

Genomic location

chr17+:20978868..21020917

Exon number

5

Exons

20978868..20980034,20982000..20982064,20988073..20988112,20992754..20993985,21020882..21020917

Genome context

Sequence
000001 GCTGCAGCTG GGCCTGGAGG CAGTGGCTCT ACAGCAGCAG TGAGAGCCGA GCTGTGGCAG ACACATGCTC TTCCCCTGAC 000080
000081 TCACGGCTGC CCAGTTCCCT CCAGCGAGGC TGCTGACCTA TTTTTCTATT AGGAACAACC AGCCAATGTG ATAATGAGGA 000160
000161 AAATGTATTC TGGCCCCTAt gaagtttagt gaagcccgaa tgaagtggag gaggccacgg agatgcacga ggaagagcat 000240
000241 tccaggcaga gggaacagcg aggacaaaag cccccgggca ggaatgggtg tgcaagcctg agatccaaca tggcggAGAG 000320
000321 CAAGCCGGAA GTGCTGCGCG GGGATCCTAA GGGAGCACTG AACAGGACAA GCTCAGTTTT GTCCCTCAAA CCTCCACAAT 000400
000401 CAGGTAAGTC AGTCGGCCTC GCATAAGATA TATGTTTTCC CCACCAATCT CCATTCTGAG GAGTGGAGTA GAAACTCCCT 000480
000481 CTCCTCTCAT GAAATGTTGA GTATCAGGGA GCAAGTGtgt gctaaaaagg gttacctcgg tggaactagg ttgctcaaat 000560
000561 cctgaacatt ccgaaggaag gactggcccc tgaccagctc tggggagcta acttctgggt ctttggaata tgcctgagga 000640
000641 gagcaccttt gtgacctgag acttcagccc tgcctacacc ttatgctaac agtgtggttt atggggaaga cctgttttta 000720
000721 tttgctggga gccctgggcc atgctgtatc tctttgactt ctggatgggt ggggaactga ggaataaatt gctaaggcca 000800
000801 gtcatgtaga tgctccatgc ctatatgact gacctccaat aaaaatcctg gcaccaagac ttgggtaagc tttcctcatt 000880
000881 gacagtaatt ggtgtgtatt attgtcacac gttgttgctg ggaggactaa gtgttgtcca tgtgactccg cagagaactc 000960
000961 ctggaagttc accccggttt ctcctgaact ctgccctatt gtcccttttt cctatgctga ttttaatctg tattcttttt 001040
001041 atccccaagt tctggcaagt ctttgatgta ttcttttccc ataataaact gtaactgtga gcataacagt ttttccaaat 001120
001121 tctgtgagcc ctcctagcga atcatcaaac ctgagagtgg cctggggagg ccttaatata atcaactaaa tgtgctttcc 001200
001201 ctctaatagg tcgcagagcg gcttggcact cagtgtcttc cagccccctc gtttctgatg agaagttagc agaaaggaag 001280
001281 catgctctat ggttccattt aaacaaagtt ctagaagagg ctaaataaat ccatgttgga aaaaaatcag gacagtgaat 001360
001361 tgctttggga gattgtcaat gaagactgac cagaaggggc atgaggacag tttctggggt tatggtagtg ttctGCAAGA 001440
001441 ACTCCATGAG CCAGTCTCTG GTAGCCTCTA ATCTGCTTTC TGTCAAATTC ACAGAGACAG AAAATCAGAT TAGGATACAA 001520
001521 ATCTACAAAT TTTGTAGAGT TCTtgccatt tatctatttg ttttctgtat gtcttatatg gtttttggtt cctcagttcc 001600
001601 tccattactg ccttttttgt atttagttga ttttttgtaa tgtttcattt tgatttcttt cttctttcct tttctgtctt 001680
001681 tttttagtaa ttgcctaagt ggttgccttg taaattacat atgacatctt aaacttgtaa caacctagtt tgaaaaatac 001760
001761 caccttagtt taagtagtac ataaacactc tcgtcctatg tccaacagta aaagttaatg gaagattata gcaacccaat 001840
001841 aaaaatgaga tcactaaggc ctcagatcct tcaggaataa aattttaggt tattcctcca gatacagaac gctgatcagc 001920
001921 tgagagggtg gctgagggca aaggtagcaa tgaaacagat agtgaaagaa ggaagttata aatattaatg atggtctctg 002000
002001 actagttata gtaaagaaga ctgtagtaaa tatgcatact ttagtctgtt tgtatttgta tatatgaatc aatttcagtt 002080
002081 ttatttctct tttctccagc tattttacat aaggaaagtg ggtggtgatt aacctcagag tctccaggga cagactatcc 002160
002161 aggactgtgc ctgaaataga agaggaatta acatcataca gaactgaata cggtgactga ggggagtttg tgtctcccct 002240
002241 tttaggaaag aagatgagaa taagtatgaa ggagagtcat gtactgtaca ttaagcaaaa gcatgatgct gttattTGAA 002320
002321 ATGTTAATTA GAGGTGCCCA CTAAAAACTG CTCAGCAATT TTCTTGGAGA CCTCAGTGCT CATGTTATTC TTTCCTCTAT 002400
002401 CTTATGTTTT CCTCTCTCCT GCCCTTTTCA GAAACAGTCT ACAGCAGAAG CCATTGACCC TGTTCAAATT ACAGAAGAGC 002480
002481 CCTTTTTGAA TTTATGAAAA TCCTGTGGAA GCTCTGAAGT TGAATATACA TGAGAAAAGC
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Predicted Small Protein

Name NONHSAT052157_smProtein_1400:1639
Length 80
Molecular weight 9075.8508
Aromaticity 0.151898734177
Instability index 50.6215189873
Isoelectric point 8.95733642578
Runs 12
Runs residual 0.0116178255592
Runs probability 0.0585806394631
Amino acid sequence MRTVSGVMVVFCKNSMSQSLVASNLLSVKFTETENQIRIQIYKFCRVLAIYLFVFCMSYM
VFGSSVPPLLPFLYLVDFL
Secondary structure LEEEEEEEEEEELLLLLHHHHHHLLEEEEELLLHHHHHHHHHHHHHHHHHHHHHHHEEEE
EEELLLLLLLLEEEEEELL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHH
HHHLLLLLLLLLLLLLLLL
PiMo iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTT
TTToooooooooooooooo