NONHSAT052310
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT052310 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2513 nt |
Genomic location |
chr17+:25744716..25757216 |
Exon number |
7 |
Exons |
25744716..25746289,25746567..25746639,25746796..25746879,25748017..25748167,25749583..25749692,25752985..25753050,25756762..25757216 |
Genome context |
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Sequence |
000001 CTGTGATGCT GGCTCTGAGC CCAGGGGGTG ACAGTGACAA GGAACTGGGT GCACACATGG GTGAGGCAGC CAGGCCTGGC 000080
000081 CAGAGAAGCA ACAGACATGT GCACAGATGT GTTTACCTAC ATACATGTGT GCACACACAT GTGCAAACAC ATGGCACGCA 000160 000161 AGCATGATGA TGCCTTAGGC AATGCAGGAT GCTGACTTTG GGCCCTGCTG ACCCAGGCAA GGCGCCTTTG TGATGCTTGC 000240 000241 CTTTATCTCA GAATGTCACT GGTGCTTAGC ACCCGTCCGC TCTCTGCCCT GCCTCTGTGT TCTACAGCAG CTACACACAG 000320 000321 ACAGTGGTAT CTGTGAGCAG CTCTGTGGAC TCAAAGGTTT TCTCCCTGAG AGGCGTAACC CAGGCCAGCT GATTCATCAG 000400 000401 AATCAGGTGA GTGTGACCTG CTCTCTTCCC TCCATGCTGA CTTGGGGACA GTGGCTAATG GTGTGGGTGG TGCTGGCCTC 000480 000481 TGGGCACGTG CTGAGGAGGG TCATCCCTGA ACACTCACCG GGTGCCCGTT CTACGCTGCC CGTGTGGACA GTTGTCTCTT 000560 000561 TCATCCTCAT GGTGGCTCCC GCATGTACCC ATTTGACAGG TGAGATGTCT GGGGTCAGAG AGGCGGTAAC TGGCCTGGGA 000640 000641 ATCCCAACAG GACCCTGGGT TTTGCTCTTG GCCCTGCCCT GTGCCATGTT GGACTTCAGG CCTGAACCCT GCGGCCTCCT 000720 000721 TGCCCCAGAT CCCAAATCTG TCCAGGGTTT CTGATCCCCA CTGGGATGGG GCAGAGCCTC GCCATGGCAG AGCCACTGAG 000800 000801 ATGGATCCAT TGTGGGTGAG GTGGAGGGGA GGGTCCTCAG AACACATCTG TGCCCTAAGC TGGGTCTTGA TGGTCCCTGT 000880 000881 GGGACCCACT GAACACACAT GGTCCTTTGT CCGAGAGTGG GATGGGGAGC CTTCTGCCTT TGGGCAGTCG TGGAAAATGA 000960 000961 AGGATCCCTG GTGAGCTGGC TGGAGGGAGA CTGTCTTCCC TCCTGTTAAA AGGGGTCCAG GTACTGGGGT TCTCCGCAAG 001040 001041 TATTTCTTTC TCTGTCTGAT CCTCTCGAGG CCTCACCCTC CTTTTGCCCT GAGTGTTCCC AGGAGGGATG GTCCATCTAG 001120 001121 GTGTTCTCCA GAACCAAGGA CCCACTGTTC TTCCTCAGTG ACCCAGGAAA ATGAAGCCCC CTCCTGTATG GATAGCTCAG 001200 001201 AATGGTGGAG TCCACCGTCC CTCCCCGAGA GATGTGGTTT CCACGAGCAT AGGGGCTGCT TTGGAGACAG TAGATTATTT 001280 001281 TCATCCCCCA AACCAAACAC CCTCCTGCTT AACTGGCGTT GTTCCTAAAG TGGCTTCACT GGTGAGACTG AAGGGCCACA 001360 001361 GTAGCCCAAG TGATGAGTGG AGTAGAACCG AGCAGTCAGG AGAGGTCTTG TTCCCGTAGG AAACTGGGCA TCTCTGTGGT 001440 001441 CCCTGAGCAT CCCAGGAGGC CGACTGTACA GAGACCTCTG GTCCCTGACC CCAGTCTGCC TCCACATCCC TGGAATAGCC 001520 001521 CATCATGGGC CCTTCAACCT TGGCAGGTGG ACACCATTCA ACATGCTGGG GCAGGATGGA CATGGTAGAG GATGTGGATA 001600 001601 CTTTGCAGGA GTGAGAGGAC ATCATTATGA AGTATGAGAA CGTACAGGGA CACCGAGCTG GGCTGCCAGC AGACACGGGG 001680 001681 CCTAAAGCCT GTTGGAATCT ACAGCAGCAC TGATCGCTTT GGGATTCTGC AGCTGAGCCC TGAGCTGGAT GGGACAGAGC 001760 001761 CAGTCCTTTC TGGGGGTCGG CTCCCAGACC GAGATGGCTC CAAACCTTGT GCAAGTCCTC AGCTCTGCCT GGGCTGCATT 001840 001841 ACAGTGAGAA GGAACTGCCC GGTCAGAGCC CGGGAGGTGA AGGTCATGAA GGAGAAGGGC AAGAGATCCT CTGAACACAT 001920 001921 CCACCAGGTC TACCTGGACA TGAGCTGGAC ACTAGGGAAC CACATCTTCT TCAGGGATCG ATATGGAGTC AAGACAAGGA 002000 002001 AGGTCAATGC ACACAGGGTT CCTCATTCAG CTGGCTTCTC TGGGTGCTGA ATGATGGGCA AAACCCGAGA AAGGGTCCTC 002080 002081 AGGACCCAGG TCTGTGCTGG CATCACATGG CGGGAAGACC CTCTGCAAGG GGGACAGGAA GGCCCTTCCC GGCCCACCAG 002160 002161 CCCGGTTCCA GCGGCCCATT TGGTCCGCTT CTCCACCTCG TCCTACACCC TGTCCTGGTG GGGCTGTCCA TGAGGCCAAG 002240 002241 GCCCAGGAAC ATGTGGGGGC TTCTGGGGAG CCCAGGGCAG CAGACCACTC TCTGGGGGCA CCTGGGACTC AGGGCATGCC 002320 002321 CAGCCTGGCC CCGGCTCAGG GAGGACCTCG GCGTTCCTGG AGATTCCTGC AGTGGAACTC TATGCTCCAG CTCCCGACGG 002400 002401 ACCTGGATGT GGGGGGCCCT TGGTTCCCCC ATGACGATTT CAAACAGAGC TGCTGGGTCC ATGTCCCTTC TAAATGTGTC 002480 002481 CTGGACAGCC CCGGGACCAT GGGACAGGCC TAG |
Predicted Small Protein
Name | NONHSAT052310_smProtein_2315:2512 |
Length | 66 |
Molecular weight | 7266.2203 |
Aromaticity | 0.107692307692 |
Instability index | 87.2707692308 |
Isoelectric point | 6.68914794922 |
Runs | 7 |
Runs residual | 0.0425961538462 |
Runs probability | 0.0469250763368 |
Amino acid sequence | MPSLAPAQGGPRRSWRFLQWNSMLQLPTDLDVGGPWFPHDDFKQSCWVHVPSKCVLDSPG TMGQA |
Secondary structure | LLLLLLLLLLLLLLHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLEEEEEELLEEEELLLL LLLLL |
PRMN | - |
PiMo | - |