NONHSAT052588
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT052588 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1023 nt |
Genomic location |
chr17-:26904621..26906270 |
Exon number |
3 |
Exons |
26904621..26904788,26905028..26905770,26906159..26906270 |
Genome context |
|
Sequence |
000001 TTGTGAGCTG CAAGCTAGGC TGCAGGCCCA GGAAGAACAG CATCAGGAAG TCCAGAAGGC AAAAGAAGCA GACATAGAGA 000080
000081 AGCTGAACCA GGCCTTGTGC TTGCGCTACA AGAATGAAAA GGAGCTCCAG GAAGTGATAC AGCAGCAGAA TGAGAAGATC 000160 000161 CTAGAACAGA TAGACAAGAG TGGCGAGCTC ATAGTATGTT CACCATCATG CCCAGGCCTT TGCCTTCTGT GTTACTGGTC 000240 000241 AGCCAGGATC CCAAGTATGA GAAATGGTTT GCTTTTGTTC ACCACATGTT GTCTATCCTT ATGTCCTATT GGACACCTCT 000320 000321 CCATTCTCAT TCCCAGAGCC TTAGAGAGGA GGTGACCCAC CTTACCCGCT CACTTCGGCG TGCGGAGACA GAGACCAAAG 000400 000401 TGCTCCAGGA GGCCCTGGCA GGCCAGCTGG ACTCCAACTG CCAGCCTATG GCCACCAATT GGATCCAGGA GAAAGTGTGG 000480 000481 CTCTCTCAGG AGGTGACTCA GAGTTAACAG AGGAGCTGGA CAGCAGGTGG GGACCCCAGG CTGTACCCCT GTTGATCTGG 000560 000561 ACATATTTCT AGGTGGACAA ACTGAGAGTG ATGTTCCTGG AGATGAAAAA TGAGAAGGAA AAACTCATGA TCAAGTTCCA 000640 000641 GAGCCATGTA AGAATGTCCA TGCCATTCCA GGGCCATTTC CTACCATCGT TAACAAATGC CCCGCCATGT TTCCCCTGTC 000720 000721 CTACCAAGTT TGCTCTTTTA TGCATAGGAC TTATAAAATC TGTTTGCTTT CTAGAGAAAT ATCCTAGAGG AGAACCTTCG 000800 000801 GCGCTCTGAC AAGGAGTTAG AAAAACTAGA TGACATTGTT CAGCATATTT ATAAGACCCT GCTCTCTATT CCAGAGGTGG 000880 000881 TGAGGGGATG CAAAGAACTA CAGGGATTGC TGGAATTTCT GAGCTAAGAA ACTGAAAGCC AGAATCTGCT TCACCTCTTT 000960 000961 TTACCTGCAA TACCCCCTTA CCCCAATACC AAGACCAACT GGCATAGAGC CAACTGAGAT AAA |
Predicted Small Protein
Name | NONHSAT052588_smProtein_590:808 |
Length | 73 |
Molecular weight | 8248.9031 |
Aromaticity | 0.111111111111 |
Instability index | 41.525 |
Isoelectric point | 9.07147216797 |
Runs | 8 |
Runs residual | 0.0298053527981 |
Runs probability | 0.0375485779897 |
Amino acid sequence | MFLEMKNEKEKLMIKFQSHVRMSMPFQGHFLPSLTNAPPCFPCPTKFALLCIGLIKSVCF LEKYPRGEPSAL |
Secondary structure | LLLLLLHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHEE LEELLLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHL LLLLLLLLLLLL |
PiMo | oooooooooooooooooooooooooooooooooooooooooTTTTTTTTTTTTTTTTTTi iiiiiiiiiiii |