NONHSAT052678
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT052678 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
1899 nt |
Genomic location |
chr17+:27280048..27281946 |
Exon number |
1 |
Exons |
27280048..27281946 |
Genome context |
|
Sequence |
000001 GTCAGTGTAT GGAGTCTTAG GTTTCTGTTT TCCTGACTTT TCGCTTTTCT GATGACCCTC TTGGTGCCTG GAAAGAATGA 000080
000081 TAAGGTCATG GATGGTGGGG TGGAGAATGT CATGTGAATT GGCTGCCCTC TGCTTTCTAC CATTCTGAGC CAACAATAAA 000160 000161 CTTCAGGAGC TGTGGACCAG AGATGTGGCC ATCAGAGAGG GGAGGGCTGA GCTAGATTGT TTGTATGAAA GAGGCAAGAT 000240 000241 TTTCTATCTC CTATGGCTAT ATTTTATGTC ACAGGCTCTC AGAGTTTAGA ACCTCATGTG CCCTCTCTCT TTGGCTTTTT 000320 000321 TTCCTACTGC TCAGGGCCCA GCTGTGCTGC TGTGTTAACC TGGAGGCATT ATGGAACAGG TAAGTAAGCC ATTGGCATCC 000400 000401 ATCCACTGGA CAAGGCTTTG CTTTGATCAA CACCATCAAT TGCAGCTGAT AATAGGAACT ATGGGCTAAT GAGGGAAATA 000480 000481 AGACTTGGCT CTGTTGACAA GAGCCAGGGA AACTTCACAC CTCTTCCTCT TGGAACTTGC AGGATGAGGT TAGGCCAGTG 000560 000561 GGGCCAAGGA ATGCTCCCAC CTTGGAGAGC TCCCGCCCTG ACAGTTGAGG GGGGATTGAG GGGCGAGCAG GTGGGATACA 000640 000641 GACGCCTTTG GAAGTGACCT CTTGTGGCTA ATCTAGGCAC TGCACTCTGC ATGGACAAGA GCTTCTCCAT CCTTCAAGGT 000720 000721 GGCTTGTGCT AGAGCCAGGG GTAGGCAGCA TGAGTGGTCA AGACTTCCCT TTTGGAAGAC TGTAGAAGCA GAAGGTGCTG 000800 000801 GTTGCTGCTA TTATTTCTTT CATGGATTTT TCTCTACTGG TTTCTGAGCT CCCATAATTT CCTGTTGCCT GCCTCTTGCT 000880 000881 GTCACTCTTG GAGAGCAGCA ATGCAGGGCA CACCTCTCAG CATGGAATGT GCATACTGGG GGCCAACGCT GGGCACTTTC 000960 000961 CATCTTTGTA GGTGCTGGGG CCCATAGGGA AGGGGCAAAC TTGAGCACAT CCTCCCAGCC ACCTTTTTCC AGAGCCCATG 001040 001041 GTTAGGGCCT TTGCCTAACT TAGGATCCAA GCCCGTAAGC TGCATTACCA CTGCTCCTGA CAATCTAAGG GTTTTGTAAG 001120 001121 GCCAAGCCAG ATTAGGGCTT CATGTTTTGG GGATCAGTCT CTGTTTCCTA TTCTAATTTC CCAAGCCTTG CTTACTTAGA 001200 001201 AATAAGGGGA AGGAGAGATG CATCAGACTT CCTGAGCCTA GTTAGCATTG AGAAGGGCAT CAGTGGCGTT GAGAAGGGAT 001280 001281 TTGGGAGTGT GCCAGCCTGT AGTTCTGGAC CTGGCAAAGA GGAGGAAATA AGGCATTGGG TGGATGTGCA GTGGGGTTCC 001360 001361 TGGGCTCCCA CATCCCTGTA ACATCAGCCA TTGGGGCCTC TGATTTTGCC TGCTATCTGT TGCACTGTCC CTTTTGGTAC 001440 001441 AGGGGACCCT GTTCAACTGC ATGCAATAAT TTCTTTTAAA ATAAaatctg agcactttgg gtggctgagg tgggaggatc 001520 001521 acttgagccc aggagttgga gaccagcctg ggcaacatag taagacccca tctctacaat aatttttttt taaattagcc 001600 001601 atgtgtggtg gcctgcatct atagtcttaa ctattcagga ggctgaggtg gatcacttga gccttggagg ttgaggctgc 001680 001681 agtgaaccgt gatccagtca ctgcattcca ccctggttga cagagtgaga ccctatctca aaaacagtag taataaaata 001760 001761 aaaTCTGAAG ATGATTGATT GGTGGGTCTA GCATGCCTTC TGGTCCTGAA GTCCATATCC CATTTATCTC CCACCTCCCG 001840 001841 TCCCTCCAAG AAAGCATCAT TCACCTGGCC ATTGCttttt tttttttttt ttttttttt |
Predicted Small Protein
Name | NONHSAT052678_smProtein_224:382 |
Length | 53 |
Molecular weight | 6190.3368 |
Aromaticity | 0.153846153846 |
Instability index | 42.5961538462 |
Isoelectric point | 8.76861572266 |
Runs | 9 |
Runs residual | 0.0227075184702 |
Runs probability | 0.0405797954819 |
Amino acid sequence | MKEARFSISYGYILCHRLSEFRTSCALSLWLFFLLLRAQLCCCVNLEALWNR |
Secondary structure | LLLLEEEEELLHHHHHLLHHHHHHHHHHHHHHHHHHHHHHHHHHLHHHHHLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTTToooooooooo |