NONHSAT052827
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT052827 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
antisense |
Length |
785 nt |
Genomic location |
chr17+:29093521..29114729 |
Exon number |
5 |
Exons |
29093521..29093606,29095852..29096082,29096890..29096983,29113745..29113845,29114457..29114729 |
Genome context |
|
Sequence |
000001 ATAAGCCATC ACCAAACTCA GAAAATGAAC AAAATTCTGT TACCCTGGAA GTCCTGCTTG TGAAAGTTTG CCACAAAAAA 000080
000081 AGAAAGGATG TATGTTGTCC AATAAGGCAA GTTCCCACAG GTAAAAAGCA GGTGCCTTTG AATCCTGACC TCAATCAAAC 000160 000161 AAAACCTGGA AATTTCCCGT CCCTTGCAGT TTCCAGTAAT GAATTTGAAC CTAGTAACAG CCACATGGTG AAGTCTTACT 000240 000241 CGTTGCTATT TAGAGTGACT CGTCCAAGAA GAAGAGAGTT TAATGGAATG ATTAATGGAG AAACCATGAA AATATTGATG 000320 000321 TCAGTGAAGA GCTTCCAGCC AGAAGAAAAT GAAATCGTGA GGATGGGGAA AAGACATTTG TTGCACAAAT GACAGTATTT 000400 000401 GATAAAAACA Gtttcatcct tgttgcccag gctggagtgc aatggcgcga tctcagctca ctgcaacctc tgcctccctg 000480 000481 gttcaagcga ttctcctgcc tcagcctcct gaATGTCAGT ACTTTGTGTG CTCTTGAAAT AGGAAATGTA CAGATCCCTA 000560 000561 TTGCCAGACA CATCATTCTC TCCATCCAGA AAGCCAACTT TGCAAGGACA AAAAAAAAAA TTAGTGTGAA ACAAAATGTG 000640 000641 GCTTTTCCAA AGACAGATGT GATTATTTAT AGTCAATGTG GCCTCAAAAT GTCATTGATT GTGAAATAGC AAACATGCAG 000720 000721 GATCATAATA TTTGGGTAGG TTTCTGAAGT TATTTCATAT CTGAGCAGTC TAAAGAAGTA TGGGG |
Predicted Small Protein
Name | NONHSAT052827_smProtein_224:391 |
Length | 56 |
Molecular weight | 6620.823 |
Aromaticity | 0.0727272727273 |
Instability index | 60.0363636364 |
Isoelectric point | 10.9631958008 |
Runs | 10 |
Runs residual | 0.030303030303 |
Runs probability | 0.039233350998 |
Amino acid sequence | MVKSYSLLFRVTRPRRREFNGMINGETMKILMSVKSFQPEENEIVRMGKRHLLHK |
Secondary structure | LLLEEEEEEEELLLLLLLLLLLLLLHHHEEEEEELLLLLLHHHHHHHLHHHHLLL |
PRMN | - |
PiMo | - |