NONHSAT052871

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT052871

Source

NONCODE4.0

Same with

,

Classification

sense

Length

5799 nt

Genomic location

chr17+:29682822..29688620

Exon number

1

Exons

29682822..29688620

Genome context

Sequence
000001 catatcactg cactccagcc tgggccacag agcgagaccc tatcaaaaga aaaaaaTAGT GTTAATACAT GATTACATGA 000080
000081 TTAGAGAAAC TAAAAGCCAA ATGGGAGATA ATGCTACTTG CTATTTTTGA AGCATCTCCC AGTGTATCTG GTTTTTAGTA 000160
000161 TTTTCAGGCA TGCATATCTT TTTTTCAAAG CTTAAAAAAT TAAAATCAAA CTCTGCTTTC TTCCTAAGCT TGGAAATTAC 000240
000241 TCATGTATTA ATGAGTAGTT CTTGGCACCA GCAGCGTTTC TTAAACTGAA AAGACTGGTC AGACATAGTT GACCTTTGCT 000320
000321 ACTGAATAAT GCCTACCATT GCATTTATTA TCAGTTATCA TATTTGTTGA TTTACCTCCA GTGTAGTTTG GTTTACCTCC 000400
000401 AGTGTACAGA ATACAATCTC AGTTTAATTT GCACCAGTAA GGTGCAACCT ATCCTGAAAC AGAAAGCTAT GGGAACAAAA 000480
000481 CCCTTTGAGA AGATGGAAAA TAAAGGAAAG AAACTGCTCC AGGGATGTAT TAGAGCTTTC TTTGAGTCCT CAGTGAAAGC 000560
000561 TTAAACACTT TATGTCCAAA CATTTTCTTT TTAGTGTATT CCCATTTATA GACACTGTAG TTAATGAACT TGCATATTCT 000640
000641 TAACTTTTGT TTATAGGAAC AAGGAAAAGT TTTGATCACT TGATATCAGA CACAAAGGCT CCTAAAAGGC AAGAAATGGA 000720
000721 ATCAGGGATC ACAACACCCC CCAAAATGAG GAGAGTAGCA GAAACTGATT ATGAAATGGG TGAGAAACAA AGTATTGATC 000800
000801 TAGATCATTG AAAATAAGGT GGGAGAGTAC ATGAAAGTCA TGTTTATTTT CCAGCCATTT CTTAGAATCT TTAGAGTGAA 000880
000881 ATATAGAAAC GTTTGCCATT TCTCAAAAGA TAAACTCTAC CATTCAAGAC AGTTATCTTG AAGCTTGTGT AAAAATTAAT 000960
000961 CATATATATT ATATACAGCA TTGTAAATAG GTAGCCAAAA CTTTTGTGTA GGCGAATAGT AATTCTCTAT GATGTTTATG 001040
001041 TTAGTATTTT AAGTATCTAC TAAAGAAAGC TGTTGAATTT TAGAAGTAAC ATTGAAATAG TTAGGTGAAG TGATTATCCA 001120
001121 GGTGTTTGAT CACGTTAATT CCCTATCTTG CTGCAGAAAC TCAGAGGATT TCCTCATCAC AACAGCACCC ACATTTACGT 001200
001201 AAAGTTTCAG TGTCTGAATC AAATGTTCTC TTGGATGAAG AAGTACTTAC TGATCCGAAG ATCCAGGCGC TGCTTCTTAC 001280
001281 TGTTCTAGTA AGGATTTCCC CTTTTTGAGT CCCCCACCCT CAAATTTTTA TTCCAGTCTA CTTTTAGGAG GCCCTTAAAT 001360
001361 ATTAAAAACA TGAATAGGAT ACAGTCTTCT ACTTCTCACC CAAACAGATA ACAATTCAGC CACAAAGTAA AAATGTTGTG 001440
001441 TGTTTACTTT TTTGCATCTT GGCAGGCTAC ACTGGTAAAA TATACCACAG ATGAGTTTGA TCAACGAATT CTTTATGAAT 001520
001521 ACTTAGCAGA GGCCAGTGTT GTGTTTCCCA AAGTCTTTCC TGTTGTGTAA GTATCTCCTT TTGATTTTAA TTCACCTTCG 001600
001601 TGCCTGTCTT TAAGTTAAAT GCTTACCCAG TAATGTGCAC TGGTTGCAAA GAGGGCAAAA TGAGATATTG TGATAGTGAT 001680
001681 TTTAGCTTTG AGACAGTAGG TTTAATGAGG GTTAAGATTA GTTTTGACCT ACTAGATCTA TTAGAAAGTT TATAAGGAAA 001760
001761 GACTTTTAAA AAATCTGGTT GATTTATTTA AGTGGTTTAT TTTGATGATC ATTGCTCATT TTCCTCACTT AGAAGCAAAC 001840
001841 TATTAGACTG CTATATCTAA ATCAGCATAT CTGTTTTGGT TTACTTTTTA GTAGAGCTTT TGTATTTATC CACAGCTGAG 001920
001921 TGAAAACAAA ATTGACCTTC TGTTTAGGAG GTGAATTGTT TACTCTCTCT TAAGGACTAA AAAATATTAA CCTCAAAGTG 002000
002001 TTCAAATTTA AATAGTTCAA ATAAATTCTT TTCCTGATCT AGGCCTTCTA TATCATGTCA TTATTTTCTT TTTTTAATCT 002080
002081 CATGTTAGAA TTTTAGAGAG TTAGAACTCA GTTATTTTTA TTAATGGAGT GTAGCCGGGT TAGAAATAAT TTTTTTCCTA 002160
002161 AGTTTCAGTT GGATCATGTA TTTCACTCCC TCTAAACTAT TTTGCTTTCC CTATTTGATC TGACTCAGCA TTTTAAAAGC 002240
002241 ACTGATTAAC ATTAAATTTA ATTTTTTTCT TTTTGTTTTG CACAGATCCT AAATTTAGTT TTAACTTCCT AAGCGCATGT 002320
002321 CAGTATACAA CAGATGGAAA TAGTACTAAA ACATGCTAAG TAGCAGACAG AGCCAACCTT GTCTTAAGCA AACATTTACC 002400
002401 GTATATGGTT ACACATGGTT ATATGACACT ACCAGTTGTT TGTTTTCACA ATTTCTTCCC TGGTGACTAA AAACAAAAGA 002480
002481 CAAACAAAAA CAGACACACa cacatgttca ttgtagaaaa tttggaaaat gaagaaatgc cccagaaagt aaaaagcact 002560
002561 catCTCCCTT TAATTTTGGC ACATTATTCT GGGGAATGTA TATTATGTTT TCCACTACAT ATTTTCATTT AATTTTCCTC 002640
002641 TAAAATGTTC CTCTGTTGAC TTTTTTTTTC TTTTAGGCAT AATTTGTTGG ACTCTAAGAT CAACACCCTG TTATCATTGT 002720
002721 GCCAAGATCC AAATTTGTTA AATCCAATCC ATGGAATTGT GCAGAGTGTG GTGTACCATG AAGAATCCCC ACCACAATAC 002800
002801 CAAACATCTT ACCTGCAAAG TAAATAAATG TATCTGGAGA AGGATGGTTG ATGAACTTGC TAACATGCGC GCTGTTGTAG 002880
002881 AATGCACTGA CTACAGAATT CTTTATAAGG GATAGACTTG TTCATACTTT TATTTCCATA TTCCATTTTT TTACTCTCTC 002960
002961 AACTGTATGT CCAATGTAAC TGGTTGACAA CTTTTTATGC TGAGTATATT TTAAGTAGGT TTTAGTTGCT TTGACACTCA 003040
003041 TTCTAAAAAC ATGTTTTCAA CATGTACATA GGGTTTATAT ATCATCAGCT ATATGACTTA TTTAATTTCT GTTACAATTA 003120
003121 AAAGATACCT TGCTTGTTAT AAGAGTAAAA TTTGATTTGT TGCAGGTTTT GGTTTTAATG GCTTGTGGCG GTTTGCAGGA 003200
003201 CCGTTTTCAA AGGTAAGAAA ATATATTTTT CTCTAACTTT TGGCAAAATG AAGGTTTCTG TTCAAATTAG TATGCCTGCT 003280
003281 TTAAGAACAC ACAATGTGCT GAAAACCAGA AAAATAATTC ACAATAAACA CATATGTTAC TTTTATAAAA AGTTTCTCAT 003360
003361 CACAAGGTTT TTTTCCAGGA GGCAGCATGG TGTTGGGGTG TGTGTATTCA CTTTTACAAA CAAAGTCAAC TTATGATCAA 003440
003441 TTTTTCAGAA GAGTATGATA AACCTCTGTG ATACTTTTCT GCCACAGTCC CTTGTGTATT TGATAATCTT AATGCACACA 003520
003521 GTTAGATATC TTATGACTAG CAAGGAGCAT TACCATGGTT AAAATCTATT TCATGAAAAC ATTTTTATTT CCAGCCTATT 003600
003601 AGATTAGATT AATTTCTCTC TGGATTTGTC CTCATTTGCT CTTATTCAgt ttttttgttt gtttgtttgt tttgtgagac 003680
003681 ggagtctcac tctgtctcca ggctggagtg cagtggcgca atcttggctc actgcaacct ctgcctccca ggttcaagcg 003760
003761 attctcctgc ctcagtctcc cgagtagctg agactacagg catgcagcac cacgcccagc taatttttgt atttttagta 003840
003841 gaaacagggt ttcaccatgt tggccaggat ggtcttgatc tcttgacctc gtgatctgcc cacctcggcc tcccaaagtg 003920
003921 ctgggattac aggcatgagc caccgcacct ggccTCAGTT TGTTTTTTGA TTGGCATTAG TTTATGTAGT GCTACATAAG 004000
004001 ATGTATATGA TCATTTTCTC TGTATGTGGG CTCTCTCCAA ATTGATCAAA GTTCCTTGAA GACAGGGTTT CTGTTTCTTC 004080
004081 CTTAAACAGT TCCTGGTGCA GTGTTTTAGA TACAGGGGGT GCTAAATCAA TATGAATTGT ATAAACCTTG TTCCAGTTTT 004160
004161 TAAGAATTGG GTATTTTATT TATTTCCTTT CACTATTACT TGAATATCTG TCAACATGCA AAGGTTGTCA CTTAAAAAAT 004240
004241 GGGCCTGAAG TTACAGAAAT AAGTATATCA TACAGAAGTT TTTGCATTTG GATTGCCAGT AACCCTCTGA GCCCTTTACA 004320
004321 GTGTCTAGTG AGTGGAATCT AAATGGCAGC TGGAATGATG ATGCTCTGCT CATTTTCTCT GTTTTGGAAA ATTGGCTAGA 004400
004401 CATCATTCCT GGTGATTGTA TTGTCTCAGT ATTACATTCA GTCTGTCTTG TGCATGGCTT TCAGAAAATG CAGGTTCATC 004480
004481 TGGAAGCTTT AAGCTGAATA GAACTCCCTG TTGTAAGTCC TATGGTAGTC TATAAATATT ACTCCACTCC CCTTTTTTAA 004560
004561 TGATAAGTAA TACAAAGGAA GAAAAATAGT AAATTAAGTC CAAACAAAAT TAATATTTTT GGCTTCAGAT GGGGATTTAC 004640
004641 TTAAAAAAAA GGAACTAAAA TAATTTCCTA TTTTCCATTA CAGCAAACAC AAATTCCAGA CTATGCTGAG CTTATTGTTA 004720
004721 AGTTTCTTGA TGCCTTGATT GACACGTACC TGCCTGGAAT TGATGAAGAA ACCAGTGAAG AATCCCTCCT GACTCCCACA 004800
004801 TCTCCTTACC CTCCTGCACT GCAGAGCCAG CTTAGTATCA CTGCCAACCT TAACCTTTCT AATTCCATGA CCTCACTTGC 004880
004881 AACTTCCCAG CATTCCCCAG GTCAGTAAAT GTGATCTTTA TATGACTTTG AGCAACAATA TAAGACACCA ACATTAGGAA 004960
004961 TTCCCTTGTG ATCAGTTTAT AGCAAATTTT GCTCCTTTTT CTTATGAGAT TCACCTTACA TTTCTTCTTT ACCTTGTAAC 005040
005041 TGACTTGACT TTTGTTATTC TATGAAGCTT TCTACTTTCA AACAAGTTGT ACATAAGACA GTAAAATGTT AAAATGTCCA 005120
005121 CATGATATTC CAAGGTTGAC AAGTTTGTAG AGTTTGGGCA GGAAGAGGAA CTTAAAACAC ATTATTCTGT AAGTGAACAG 005200
005201 AACTATAATT TATTTACTAG ATATACTAAC ATTGCCCTAA GGGCCTCTTT CTCTGTCTCT GATACAGCAT ACTATATCaa 005280
005281 aaaaaaaaaa aaaaaaaaaa aaaaagaaga agaagaagaa aCACAAAATC TATTAGGTAC CTCACTTTCC TGCTGCCAGC 005360
005361 AATAACTCAA CCATCCATAG ACCATCCTGA AAATCTGGAA GTAAATAAAT AATCAAACAA AAAATTCATC TCAAGAAAAT 005440
005441 AACATCTTAA AGCCCATAAG CATATATATA CCAATTCGTA ATGCAACTTA GATTTGAATA CACTGAGAAA TACTAATAGC 005520
005521 TAATAGCTCC AGTGGGACTG AGATAAACAA GGTGGGAGAA ATGGCAAACC TACAGAACTC TGGACTTATT CAGTGTCATA 005600
005601 GTGAATGGTT TCATACAACT CTGGTTGACC CTGGAGGTGC TATTCATTAT AGAACTTAAA CTATTGTGTG TGTTATTATG 005680
005681 ACAGTGAGTA ATGAAGGAAA GCTTTTGTTA TGGTTGTGTT TTCTAtttag aaagatattc ttctaaaatg gttaaaaata 005760
005761 aaagaaactt tagttgttta acgttccatt atctgaaaa
[back to top]

Predicted Small Protein

Name NONHSAT052871_smProtein_2750:2914
Length 55
Molecular weight 6539.7536
Aromaticity 0.0740740740741
Instability index 40.4092592593
Isoelectric point 9.19500732422
Runs 11
Runs residual 0.0410117434508
Runs probability 0.0452216922806
Amino acid sequence MELCRVWCTMKNPHHNTKHLTCKVNKCIWRRMVDELANMRAVVECTDYRILYKG
Secondary structure LEEEEEEELLLLLLLLLLLEEELLLHHHHHHHHHHHHLLLLEEEELLEEEEELL
PRMN -
PiMo -