NONHSAT052871
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT052871 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
5799 nt |
Genomic location |
chr17+:29682822..29688620 |
Exon number |
1 |
Exons |
29682822..29688620 |
Genome context |
|
Sequence |
000001 catatcactg cactccagcc tgggccacag agcgagaccc tatcaaaaga aaaaaaTAGT GTTAATACAT GATTACATGA 000080
000081 TTAGAGAAAC TAAAAGCCAA ATGGGAGATA ATGCTACTTG CTATTTTTGA AGCATCTCCC AGTGTATCTG GTTTTTAGTA 000160 000161 TTTTCAGGCA TGCATATCTT TTTTTCAAAG CTTAAAAAAT TAAAATCAAA CTCTGCTTTC TTCCTAAGCT TGGAAATTAC 000240 000241 TCATGTATTA ATGAGTAGTT CTTGGCACCA GCAGCGTTTC TTAAACTGAA AAGACTGGTC AGACATAGTT GACCTTTGCT 000320 000321 ACTGAATAAT GCCTACCATT GCATTTATTA TCAGTTATCA TATTTGTTGA TTTACCTCCA GTGTAGTTTG GTTTACCTCC 000400 000401 AGTGTACAGA ATACAATCTC AGTTTAATTT GCACCAGTAA GGTGCAACCT ATCCTGAAAC AGAAAGCTAT GGGAACAAAA 000480 000481 CCCTTTGAGA AGATGGAAAA TAAAGGAAAG AAACTGCTCC AGGGATGTAT TAGAGCTTTC TTTGAGTCCT CAGTGAAAGC 000560 000561 TTAAACACTT TATGTCCAAA CATTTTCTTT TTAGTGTATT CCCATTTATA GACACTGTAG TTAATGAACT TGCATATTCT 000640 000641 TAACTTTTGT TTATAGGAAC AAGGAAAAGT TTTGATCACT TGATATCAGA CACAAAGGCT CCTAAAAGGC AAGAAATGGA 000720 000721 ATCAGGGATC ACAACACCCC CCAAAATGAG GAGAGTAGCA GAAACTGATT ATGAAATGGG TGAGAAACAA AGTATTGATC 000800 000801 TAGATCATTG AAAATAAGGT GGGAGAGTAC ATGAAAGTCA TGTTTATTTT CCAGCCATTT CTTAGAATCT TTAGAGTGAA 000880 000881 ATATAGAAAC GTTTGCCATT TCTCAAAAGA TAAACTCTAC CATTCAAGAC AGTTATCTTG AAGCTTGTGT AAAAATTAAT 000960 000961 CATATATATT ATATACAGCA TTGTAAATAG GTAGCCAAAA CTTTTGTGTA GGCGAATAGT AATTCTCTAT GATGTTTATG 001040 001041 TTAGTATTTT AAGTATCTAC TAAAGAAAGC TGTTGAATTT TAGAAGTAAC ATTGAAATAG TTAGGTGAAG TGATTATCCA 001120 001121 GGTGTTTGAT CACGTTAATT CCCTATCTTG CTGCAGAAAC TCAGAGGATT TCCTCATCAC AACAGCACCC ACATTTACGT 001200 001201 AAAGTTTCAG TGTCTGAATC AAATGTTCTC TTGGATGAAG AAGTACTTAC TGATCCGAAG ATCCAGGCGC TGCTTCTTAC 001280 001281 TGTTCTAGTA AGGATTTCCC CTTTTTGAGT CCCCCACCCT CAAATTTTTA TTCCAGTCTA CTTTTAGGAG GCCCTTAAAT 001360 001361 ATTAAAAACA TGAATAGGAT ACAGTCTTCT ACTTCTCACC CAAACAGATA ACAATTCAGC CACAAAGTAA AAATGTTGTG 001440 001441 TGTTTACTTT TTTGCATCTT GGCAGGCTAC ACTGGTAAAA TATACCACAG ATGAGTTTGA TCAACGAATT CTTTATGAAT 001520 001521 ACTTAGCAGA GGCCAGTGTT GTGTTTCCCA AAGTCTTTCC TGTTGTGTAA GTATCTCCTT TTGATTTTAA TTCACCTTCG 001600 001601 TGCCTGTCTT TAAGTTAAAT GCTTACCCAG TAATGTGCAC TGGTTGCAAA GAGGGCAAAA TGAGATATTG TGATAGTGAT 001680 001681 TTTAGCTTTG AGACAGTAGG TTTAATGAGG GTTAAGATTA GTTTTGACCT ACTAGATCTA TTAGAAAGTT TATAAGGAAA 001760 001761 GACTTTTAAA AAATCTGGTT GATTTATTTA AGTGGTTTAT TTTGATGATC ATTGCTCATT TTCCTCACTT AGAAGCAAAC 001840 001841 TATTAGACTG CTATATCTAA ATCAGCATAT CTGTTTTGGT TTACTTTTTA GTAGAGCTTT TGTATTTATC CACAGCTGAG 001920 001921 TGAAAACAAA ATTGACCTTC TGTTTAGGAG GTGAATTGTT TACTCTCTCT TAAGGACTAA AAAATATTAA CCTCAAAGTG 002000 002001 TTCAAATTTA AATAGTTCAA ATAAATTCTT TTCCTGATCT AGGCCTTCTA TATCATGTCA TTATTTTCTT TTTTTAATCT 002080 002081 CATGTTAGAA TTTTAGAGAG TTAGAACTCA GTTATTTTTA TTAATGGAGT GTAGCCGGGT TAGAAATAAT TTTTTTCCTA 002160 002161 AGTTTCAGTT GGATCATGTA TTTCACTCCC TCTAAACTAT TTTGCTTTCC CTATTTGATC TGACTCAGCA TTTTAAAAGC 002240 002241 ACTGATTAAC ATTAAATTTA ATTTTTTTCT TTTTGTTTTG CACAGATCCT AAATTTAGTT TTAACTTCCT AAGCGCATGT 002320 002321 CAGTATACAA CAGATGGAAA TAGTACTAAA ACATGCTAAG TAGCAGACAG AGCCAACCTT GTCTTAAGCA AACATTTACC 002400 002401 GTATATGGTT ACACATGGTT ATATGACACT ACCAGTTGTT TGTTTTCACA ATTTCTTCCC TGGTGACTAA AAACAAAAGA 002480 002481 CAAACAAAAA CAGACACACa cacatgttca ttgtagaaaa tttggaaaat gaagaaatgc cccagaaagt aaaaagcact 002560 002561 catCTCCCTT TAATTTTGGC ACATTATTCT GGGGAATGTA TATTATGTTT TCCACTACAT ATTTTCATTT AATTTTCCTC 002640 002641 TAAAATGTTC CTCTGTTGAC TTTTTTTTTC TTTTAGGCAT AATTTGTTGG ACTCTAAGAT CAACACCCTG TTATCATTGT 002720 002721 GCCAAGATCC AAATTTGTTA AATCCAATCC ATGGAATTGT GCAGAGTGTG GTGTACCATG AAGAATCCCC ACCACAATAC 002800 002801 CAAACATCTT ACCTGCAAAG TAAATAAATG TATCTGGAGA AGGATGGTTG ATGAACTTGC TAACATGCGC GCTGTTGTAG 002880 002881 AATGCACTGA CTACAGAATT CTTTATAAGG GATAGACTTG TTCATACTTT TATTTCCATA TTCCATTTTT TTACTCTCTC 002960 002961 AACTGTATGT CCAATGTAAC TGGTTGACAA CTTTTTATGC TGAGTATATT TTAAGTAGGT TTTAGTTGCT TTGACACTCA 003040 003041 TTCTAAAAAC ATGTTTTCAA CATGTACATA GGGTTTATAT ATCATCAGCT ATATGACTTA TTTAATTTCT GTTACAATTA 003120 003121 AAAGATACCT TGCTTGTTAT AAGAGTAAAA TTTGATTTGT TGCAGGTTTT GGTTTTAATG GCTTGTGGCG GTTTGCAGGA 003200 003201 CCGTTTTCAA AGGTAAGAAA ATATATTTTT CTCTAACTTT TGGCAAAATG AAGGTTTCTG TTCAAATTAG TATGCCTGCT 003280 003281 TTAAGAACAC ACAATGTGCT GAAAACCAGA AAAATAATTC ACAATAAACA CATATGTTAC TTTTATAAAA AGTTTCTCAT 003360 003361 CACAAGGTTT TTTTCCAGGA GGCAGCATGG TGTTGGGGTG TGTGTATTCA CTTTTACAAA CAAAGTCAAC TTATGATCAA 003440 003441 TTTTTCAGAA GAGTATGATA AACCTCTGTG ATACTTTTCT GCCACAGTCC CTTGTGTATT TGATAATCTT AATGCACACA 003520 003521 GTTAGATATC TTATGACTAG CAAGGAGCAT TACCATGGTT AAAATCTATT TCATGAAAAC ATTTTTATTT CCAGCCTATT 003600 003601 AGATTAGATT AATTTCTCTC TGGATTTGTC CTCATTTGCT CTTATTCAgt ttttttgttt gtttgtttgt tttgtgagac 003680 003681 ggagtctcac tctgtctcca ggctggagtg cagtggcgca atcttggctc actgcaacct ctgcctccca ggttcaagcg 003760 003761 attctcctgc ctcagtctcc cgagtagctg agactacagg catgcagcac cacgcccagc taatttttgt atttttagta 003840 003841 gaaacagggt ttcaccatgt tggccaggat ggtcttgatc tcttgacctc gtgatctgcc cacctcggcc tcccaaagtg 003920 003921 ctgggattac aggcatgagc caccgcacct ggccTCAGTT TGTTTTTTGA TTGGCATTAG TTTATGTAGT GCTACATAAG 004000 004001 ATGTATATGA TCATTTTCTC TGTATGTGGG CTCTCTCCAA ATTGATCAAA GTTCCTTGAA GACAGGGTTT CTGTTTCTTC 004080 004081 CTTAAACAGT TCCTGGTGCA GTGTTTTAGA TACAGGGGGT GCTAAATCAA TATGAATTGT ATAAACCTTG TTCCAGTTTT 004160 004161 TAAGAATTGG GTATTTTATT TATTTCCTTT CACTATTACT TGAATATCTG TCAACATGCA AAGGTTGTCA CTTAAAAAAT 004240 004241 GGGCCTGAAG TTACAGAAAT AAGTATATCA TACAGAAGTT TTTGCATTTG GATTGCCAGT AACCCTCTGA GCCCTTTACA 004320 004321 GTGTCTAGTG AGTGGAATCT AAATGGCAGC TGGAATGATG ATGCTCTGCT CATTTTCTCT GTTTTGGAAA ATTGGCTAGA 004400 004401 CATCATTCCT GGTGATTGTA TTGTCTCAGT ATTACATTCA GTCTGTCTTG TGCATGGCTT TCAGAAAATG CAGGTTCATC 004480 004481 TGGAAGCTTT AAGCTGAATA GAACTCCCTG TTGTAAGTCC TATGGTAGTC TATAAATATT ACTCCACTCC CCTTTTTTAA 004560 004561 TGATAAGTAA TACAAAGGAA GAAAAATAGT AAATTAAGTC CAAACAAAAT TAATATTTTT GGCTTCAGAT GGGGATTTAC 004640 004641 TTAAAAAAAA GGAACTAAAA TAATTTCCTA TTTTCCATTA CAGCAAACAC AAATTCCAGA CTATGCTGAG CTTATTGTTA 004720 004721 AGTTTCTTGA TGCCTTGATT GACACGTACC TGCCTGGAAT TGATGAAGAA ACCAGTGAAG AATCCCTCCT GACTCCCACA 004800 004801 TCTCCTTACC CTCCTGCACT GCAGAGCCAG CTTAGTATCA CTGCCAACCT TAACCTTTCT AATTCCATGA CCTCACTTGC 004880 004881 AACTTCCCAG CATTCCCCAG GTCAGTAAAT GTGATCTTTA TATGACTTTG AGCAACAATA TAAGACACCA ACATTAGGAA 004960 004961 TTCCCTTGTG ATCAGTTTAT AGCAAATTTT GCTCCTTTTT CTTATGAGAT TCACCTTACA TTTCTTCTTT ACCTTGTAAC 005040 005041 TGACTTGACT TTTGTTATTC TATGAAGCTT TCTACTTTCA AACAAGTTGT ACATAAGACA GTAAAATGTT AAAATGTCCA 005120 005121 CATGATATTC CAAGGTTGAC AAGTTTGTAG AGTTTGGGCA GGAAGAGGAA CTTAAAACAC ATTATTCTGT AAGTGAACAG 005200 005201 AACTATAATT TATTTACTAG ATATACTAAC ATTGCCCTAA GGGCCTCTTT CTCTGTCTCT GATACAGCAT ACTATATCaa 005280 005281 aaaaaaaaaa aaaaaaaaaa aaaaagaaga agaagaagaa aCACAAAATC TATTAGGTAC CTCACTTTCC TGCTGCCAGC 005360 005361 AATAACTCAA CCATCCATAG ACCATCCTGA AAATCTGGAA GTAAATAAAT AATCAAACAA AAAATTCATC TCAAGAAAAT 005440 005441 AACATCTTAA AGCCCATAAG CATATATATA CCAATTCGTA ATGCAACTTA GATTTGAATA CACTGAGAAA TACTAATAGC 005520 005521 TAATAGCTCC AGTGGGACTG AGATAAACAA GGTGGGAGAA ATGGCAAACC TACAGAACTC TGGACTTATT CAGTGTCATA 005600 005601 GTGAATGGTT TCATACAACT CTGGTTGACC CTGGAGGTGC TATTCATTAT AGAACTTAAA CTATTGTGTG TGTTATTATG 005680 005681 ACAGTGAGTA ATGAAGGAAA GCTTTTGTTA TGGTTGTGTT TTCTAtttag aaagatattc ttctaaaatg gttaaaaata 005760 005761 aaagaaactt tagttgttta acgttccatt atctgaaaa |
Predicted Small Protein
Name | NONHSAT052871_smProtein_2750:2914 |
Length | 55 |
Molecular weight | 6539.7536 |
Aromaticity | 0.0740740740741 |
Instability index | 40.4092592593 |
Isoelectric point | 9.19500732422 |
Runs | 11 |
Runs residual | 0.0410117434508 |
Runs probability | 0.0452216922806 |
Amino acid sequence | MELCRVWCTMKNPHHNTKHLTCKVNKCIWRRMVDELANMRAVVECTDYRILYKG |
Secondary structure | LEEEEEEELLLLLLLLLLLEEELLLHHHHHHHHHHHHLLLLEEEELLEEEEELL |
PRMN | - |
PiMo | - |