NONHSAT053371
Please input one-sentence summary here.
Contents
Annotated Information
Transcriptomic Nomeclature
Please input transcriptomic nomeclature information here.
Function
Please input function information here.
Regulation
Please input regulation information here.
Expression
Please input expression information here.
Allelic Information and Variation
Please input allelic information and variation information here.
Evolution
Please input evolution information here.
You can also add sub-section(s) at will.
Labs working on this lncRNA
Please input related labs here.
References
Please input cited references here.
Basic Information
Transcript ID |
NONHSAT053371 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
2141 nt |
Genomic location |
chr17-:36959384..36964273 |
Exon number |
3 |
Exons |
36959384..36960643,36961651..36962315,36964058..36964273 |
Genome context |
|
Sequence |
000001 GCAGTGGCGC CATCTCGGCT CACTGCAAGC TCTGCCTCCT GGGTTCATGC CATTCTCCTG CCTCAGCTTC CCAAGTAGCT 000080
000081 GGGACTACAG GTGCCCACCA TGCCCAGCTA ATTATTTTGT ATTTTTAGTA GAGACAGTGT TTCACCATGT TAGCTAGGAT 000160 000161 GGTCTTGATC TCCTGGCCTC GTGATCTGCC TGCCTCAGCC TCCCAAAGTG CTGGGAAGGT GGGTGGATCA CCTGAGGTCA 000240 000241 GGAGGTCGAG ACCATCCTAA CCAACACGGT GAAACCCCAT CTCTACTAAA AATATAAAAT TAGTTGGTCA TGGTGGCACA 000320 000321 TGCCTGTAAT CCCAGTTATT TGGGAGGCTG AGACAGGAGA ACTGCTTGAA CCCAGGGGTT GGAGGTTACA GTGAGCTGAG 000400 000401 ATCTCACCAC TGCACAGCAG CCCAGGCGAC AGTGCAAGAC TTTGTCTCAA AAAAAAAAAA AAGTCTCTTA ACAAAAACCA 000480 000481 AGCCAGACAC AGCAGTCCAT GCTTGTAATC TCAGCGCTTT GGGAGGCTAA GGCAGGGAGG ATCACTTAAG GTCAAGGGAT 000560 000561 TAAGGTTGCA GTGAGCTACG ATCAAGCCAC TGCATTCTTG CTTGGGCGAC AGAGCGAGAC CCTCTCTTAA ATTAAACCCT 000640 000641 CTTTAAAAAA CCCCTCAATT ATTCTCTCTG GGTGTGGTGG CTCATACCTG TAATCCCAGC AGTTTGAGAG TCCAAGGCAG 000720 000721 GAGGATCGCT TGAGGCCAGG AGTTCCAGAC CAGTCTGAGC AACATAATAA GACACTATCT CTACAAAAAA TTATTTTAAA 000800 000801 AACATTTAAA AAAACAAAAG CTAGTAGTTC TTTGCCCTGC CTGATCCCAC TTTTAGTCAT GCTACCCAAA GGCAACTACT 000880 000881 TGCCAGATCT TAGATATTTT CTTACTGTTA TAGTAAATAA TCTGTTAGTG TAAATGAGCT CTCATACACT CCTAGTCCCA 000960 000961 TGTTTCTTCT ATCCCTATCT TTCCAATATG GTTACATCAG AATTTTTGGT TCAGTGAGTA TGTGGATTCA TACTTGTATG 001040 001041 ATATATAAAT ATTGTTTACT GATACTTTTC ATTCCTAAGC CAAGCAGAAT ATGGAGGTTA CATTTCCTTT CTTGTATGAT 001120 001121 TTGTATATTT TTTCCTAGTG TCAGTATTTG CTTCCTGCAA TCTAAACCAT GTCTTTGAGT TCTAGGAAAT TTTCTTGTAT 001200 001201 TATTTCTTTG ATAACTTCTT TCTTCTCCCT ACAAGGTCTC ACTCTGTTGC CTAGGTTGGA GTGCAGTGGG GCGATCATGG 001280 001281 CTTACTGCAG CCTCACACTC CCAGGTTCAA CTGATCCTCC TACCTCAGCC TTCCAAATAG TTGGGGCTAC ACGGGTGCCA 001360 001361 CCATGCCCAA CTAATTAAAA AAAAATTTTT TTTTTGCAGA GATGGGAGGT CTCACTTTGT TGCCTAGGCT GGTCTTGAAC 001440 001441 TCTTGGACTC AAGCAATCCT CCTGCCTAAG CCTCCCAAAG TGCTGGGATT ACGGGCTAGA GCCACTGTGC CTGGCAATCG 001520 001521 TTTTTGTTTT TTTTTTTTAA GCCTCCTACT CTCATTTGAA TGCTCTAATA TCTTTCATTT ATTATCTGAA GCAGATTTTT 001600 001601 AATAGTAAAT TGTTTTTCGT TTGGAGGTTT TTATTTTTTT TTGAGACAGA GACTCACTCT GTCACCCAGG CTGGAGTGCA 001680 001681 GTGGTGCGAT CTTGGCTCAC TGCAACCTCC GCCTCCTCGG TTCAAGCGAT TCTCCTGCCT CAGCCTCCCA AGTAGCTGGG 001760 001761 ATTACAGGCA CACACCACCA CACCCAGCTT ATTTTTGTAA TTTTAGTAGA GACAGGGTTT CCCCATGTTG GCCAGGCTGG 001840 001841 TCTCGAACTC CTGACGTCAG GTGATCTGCC CGCCTTGGCC TCCCAAAGTG CTGGGATTAC AGGCGTGAGC CACCATGCCT 001920 001921 GGCCCTATTT ATTATTTTCT GAGGCTAAGT TATTCCTTCA GCTTCTGGCT TCTAGCTTAG TCCTAAAGTA GTGTACTCAT 002000 002001 GGGCTGTGTC ATGAATTTCT AGTCTCCAAT GGGTAGTTAG ATGGTAGATG TTAACAGTTA CATGGATAAC CTAGTCTTCT 002080 002081 GTTCTTCTGT CAATTGTTGA GCAAACCATT GGGATATAAT TGCTACAAGT TTAGGTTCCT G |
Predicted Small Protein
Name | NONHSAT053371_smProtein_959:1177 |
Length | 73 |
Molecular weight | 8596.5477 |
Aromaticity | 0.194444444444 |
Instability index | 45.0791666667 |
Isoelectric point | 9.26971435547 |
Runs | 14 |
Runs residual | 0.0535279805353 |
Runs probability | 0.0457390163272 |
Amino acid sequence | MFLLSLSFQYGYIRIFGSVSMWIHTCMIYKYCLLILFIPKPSRIWRLHFLSCMICIFFPS VSICFLQSKPCL |
Secondary structure | LEEEEEEELLLEEEEEELHHHHHHHHHHHHHHHHHHLLLLLLLLEEHHHHLLEEEEELLL LEEEEEEELLLL |
PRMN | LLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHLLLLLHHHHHHHHHHHHHHHHH HHLLLLLLLLLL |
PiMo | oooooooooooooooooTTTTTTTTTTTTTTTTTTTTTiiiiiTTTTTTTTTTTTTTTTT TToooooooooo |