NONHSAT053449
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT053449 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2036 nt |
Genomic location |
chr17+:37705194..37707229 |
Exon number |
1 |
Exons |
37705194..37707229 |
Genome context |
|
Sequence |
000001 AGTCGGTGCT GCTGGAATTA CTGCACAGCT GGCGCTCCCC CCAGCACCCC GAGCAGAGCA GCAGTGCAGA TTAAAATCTC 000080
000081 CAATTAGCGT TAAAGTGAAG TGAGGAGGTG CTGAGGCTGC CAAGGAGGCC AGACGGGGGC CCTGGGTTGG CAAAACCCCC 000160 000161 ACTCTTGCCT GGATTCTGAG TGTCACCCTT AGTCACCCCT ACTTTCCCAG CTCCTCTCCC AACAGCTTTC AGTGCCCATT 000240 000241 AGTTTTGTAT CGCTTGGGGC CAGAGGGCTT TGCAGAGGGG TGGAAGGGGG CAAATGCCTT ACCTAAAATG CTAGGGACAC 000320 000321 CGTAAGTATG GAGGAGGAGA GCGGTCAGTG CTCATCAAGG GAGATACCCT ATTCACTGCC TGCCAGGCAG CCAGGCCAAG 000400 000401 GTGACTTCAC GCTACAGCTC TGCTTCTTCT TTTTGCTTGA AGAAAAGATA AACAGGACGG GTCCTTTCAG GTCCTTTACC 000480 000481 TATGAAGTGC TAGGGGACAT GGTGCCCACA TGAACATCTC TCTCTGCATA TTTTATCCTA TCTGACCCAT CTGCTCCCAC 000560 000561 CGAAGTTATG GCTCCTTCCT CCCTCTCTCC ATTCTTCTCT CAGCTTTCCT GTGGGCAGGG GTAGGCACAG CCAGGCTTGG 000640 000641 GAGCATCGCC ATGCCCTGCC ACCTGGGTCC CAGCCTGCTC CTCGTTATAG TCTTCCCAGT TTGGGGAAGA GCAGTGATAT 000720 000721 GCCAAGAATG GAGGCCTCAG ACTCTCCCAA TCCCTGATTT TTACATGTCC CCCTATAAGG CCCCTCTGCC ATCTACACTT 000800 000801 TTGCCCTTCA TCCACAAAGC CCAAAAGGAA GGCATTATAG CTAGCCATGC CCTCTGACTG CCCTCTGCCC CTTTAAGGGA 000880 000881 AATGGAAATG GGTACCCAGC TGACTGAACC TACTCAACAC CTCCAGAAAT TAGACACTAG GGCATGGTGC CACCCTCCCA 000960 000961 GGCTGGCACA TGCTACCCTG GCAGAGGATC AAATAACCCC CCCATCATAC CCTGCCCCAT GTCTTCCTCT Actctctccc 001040 001041 tcatgctttc tctctctctc tctctctctg tctctctctc tctctctctc tcAGCTCAAA GCACAGCTGA GCCTTAAAAG 001120 001121 GGGGGTTGAG GGGGTGGAGA GACCAAGCTG GGGCAGGGGG GTATAGAGCT CCAATAGCAC GTTTTCACCT GCCATTTAAT 001200 001201 TGGATGTATT TTTAATTAAT GGGACCTCAG GGACCAACAT GAGACAATCT GATATCTGAA TAGGGACAGG GGAGGGATTG 001280 001281 GGTAAGGGAG GAGGATTGGG CCACTGGGTG CGGTTACCGG GAACCCAGGC CCATCAATCA CTGGCCACTT TGCGTTCTGG 001360 001361 CATGGAGAAT AGCGAGGTGG AGGAAGGGAG GCACTGGGGA GAGGTGCCAG GATTTCCCCC CAACTGCCAG GACCTCCAAA 001440 001441 CGGATTGGAA CTATACTGGT TGACTCAGGT CTGGAGCCCA AAATCACAGC CAGAATATAA GGTGAGGCTG TTTTCTTGCT 001520 001521 CCTGGGGTTT TGTCTGGTTG GGCTTGTCCC AGGGAGTGCT GTAAAATTGT GAAAGGAAGG TGGGGACAGA GCTTTGAGGT 001600 001601 CCTTGTAGAG AGAAGACAAG AGCTATGGAC CATAGAACCA GAGACTATGG AGAGACGGAG GAGAAGGGCA GGGTTCAGAG 001680 001681 GTATTTCTGT ATGTTTTGAC ATAAAATAAG TGCCATGGAG ATTACATGCA AAATGGCATG CAAATGAGGC CTGGTGCCTT 001760 001761 TTGGGGTATG AATCGTAGAA CCTTGCTTTT GCAAGAAAGG GAACTTggcc aggtgcggtg gctcacgcct ataatcccag 001840 001841 cactttggga ggccgaagca ggtggatcac ttgaggccag gagttcgaga ccagcctggc caacatggtg aaacgccatc 001920 001921 tctaccaaaa aatacaaaaa aattatctgg gcatggtgat gtgtgcctgt aatcccacct acttgggagg ctaaggtagg 002000 002001 agaattagcc tgggcaacag agcaagactc tgtctc |
Predicted Small Protein
Name | NONHSAT053449_smProtein_881:1165 |
Length | 95 |
Molecular weight | 10275.8004 |
Aromaticity | 0.0425531914894 |
Instability index | 45.8989361702 |
Isoelectric point | 7.77655029297 |
Runs | 11 |
Runs residual | 0.0117946345976 |
Runs probability | 0.0701690995809 |
Amino acid sequence | MEMGTQLTEPTQHLQKLDTRAWCHPPRLAHATLAEDQITPPSYPAPCLPLLSPSCFLSLS LSLSLSLSLSQLKAQLSLKRGVEGVERPSWGRGV |
Secondary structure | LLLLLLLLLLHHHHHHLLLLLLLLLLLHHHHHHHHHLLLLLLLLLLLLLLLLLHHHLLLL LLLLLLLLHHHHHHHHHHHLLLLLEELLLLLLLL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHH HHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLL |
PiMo | oooooooooooooooooooooooooooooooooooooooooooooooooTTTTTTTTTTT TTTTTTTiiiiiiiiiiiiiiiiiiiiiiiiiii |