NONHSAT053449

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT053449

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

2036 nt

Genomic location

chr17+:37705194..37707229

Exon number

1

Exons

37705194..37707229

Genome context

Sequence
000001 AGTCGGTGCT GCTGGAATTA CTGCACAGCT GGCGCTCCCC CCAGCACCCC GAGCAGAGCA GCAGTGCAGA TTAAAATCTC 000080
000081 CAATTAGCGT TAAAGTGAAG TGAGGAGGTG CTGAGGCTGC CAAGGAGGCC AGACGGGGGC CCTGGGTTGG CAAAACCCCC 000160
000161 ACTCTTGCCT GGATTCTGAG TGTCACCCTT AGTCACCCCT ACTTTCCCAG CTCCTCTCCC AACAGCTTTC AGTGCCCATT 000240
000241 AGTTTTGTAT CGCTTGGGGC CAGAGGGCTT TGCAGAGGGG TGGAAGGGGG CAAATGCCTT ACCTAAAATG CTAGGGACAC 000320
000321 CGTAAGTATG GAGGAGGAGA GCGGTCAGTG CTCATCAAGG GAGATACCCT ATTCACTGCC TGCCAGGCAG CCAGGCCAAG 000400
000401 GTGACTTCAC GCTACAGCTC TGCTTCTTCT TTTTGCTTGA AGAAAAGATA AACAGGACGG GTCCTTTCAG GTCCTTTACC 000480
000481 TATGAAGTGC TAGGGGACAT GGTGCCCACA TGAACATCTC TCTCTGCATA TTTTATCCTA TCTGACCCAT CTGCTCCCAC 000560
000561 CGAAGTTATG GCTCCTTCCT CCCTCTCTCC ATTCTTCTCT CAGCTTTCCT GTGGGCAGGG GTAGGCACAG CCAGGCTTGG 000640
000641 GAGCATCGCC ATGCCCTGCC ACCTGGGTCC CAGCCTGCTC CTCGTTATAG TCTTCCCAGT TTGGGGAAGA GCAGTGATAT 000720
000721 GCCAAGAATG GAGGCCTCAG ACTCTCCCAA TCCCTGATTT TTACATGTCC CCCTATAAGG CCCCTCTGCC ATCTACACTT 000800
000801 TTGCCCTTCA TCCACAAAGC CCAAAAGGAA GGCATTATAG CTAGCCATGC CCTCTGACTG CCCTCTGCCC CTTTAAGGGA 000880
000881 AATGGAAATG GGTACCCAGC TGACTGAACC TACTCAACAC CTCCAGAAAT TAGACACTAG GGCATGGTGC CACCCTCCCA 000960
000961 GGCTGGCACA TGCTACCCTG GCAGAGGATC AAATAACCCC CCCATCATAC CCTGCCCCAT GTCTTCCTCT Actctctccc 001040
001041 tcatgctttc tctctctctc tctctctctg tctctctctc tctctctctc tcAGCTCAAA GCACAGCTGA GCCTTAAAAG 001120
001121 GGGGGTTGAG GGGGTGGAGA GACCAAGCTG GGGCAGGGGG GTATAGAGCT CCAATAGCAC GTTTTCACCT GCCATTTAAT 001200
001201 TGGATGTATT TTTAATTAAT GGGACCTCAG GGACCAACAT GAGACAATCT GATATCTGAA TAGGGACAGG GGAGGGATTG 001280
001281 GGTAAGGGAG GAGGATTGGG CCACTGGGTG CGGTTACCGG GAACCCAGGC CCATCAATCA CTGGCCACTT TGCGTTCTGG 001360
001361 CATGGAGAAT AGCGAGGTGG AGGAAGGGAG GCACTGGGGA GAGGTGCCAG GATTTCCCCC CAACTGCCAG GACCTCCAAA 001440
001441 CGGATTGGAA CTATACTGGT TGACTCAGGT CTGGAGCCCA AAATCACAGC CAGAATATAA GGTGAGGCTG TTTTCTTGCT 001520
001521 CCTGGGGTTT TGTCTGGTTG GGCTTGTCCC AGGGAGTGCT GTAAAATTGT GAAAGGAAGG TGGGGACAGA GCTTTGAGGT 001600
001601 CCTTGTAGAG AGAAGACAAG AGCTATGGAC CATAGAACCA GAGACTATGG AGAGACGGAG GAGAAGGGCA GGGTTCAGAG 001680
001681 GTATTTCTGT ATGTTTTGAC ATAAAATAAG TGCCATGGAG ATTACATGCA AAATGGCATG CAAATGAGGC CTGGTGCCTT 001760
001761 TTGGGGTATG AATCGTAGAA CCTTGCTTTT GCAAGAAAGG GAACTTggcc aggtgcggtg gctcacgcct ataatcccag 001840
001841 cactttggga ggccgaagca ggtggatcac ttgaggccag gagttcgaga ccagcctggc caacatggtg aaacgccatc 001920
001921 tctaccaaaa aatacaaaaa aattatctgg gcatggtgat gtgtgcctgt aatcccacct acttgggagg ctaaggtagg 002000
002001 agaattagcc tgggcaacag agcaagactc tgtctc
[back to top]

Predicted Small Protein

Name NONHSAT053449_smProtein_881:1165
Length 95
Molecular weight 10275.8004
Aromaticity 0.0425531914894
Instability index 45.8989361702
Isoelectric point 7.77655029297
Runs 11
Runs residual 0.0117946345976
Runs probability 0.0701690995809
Amino acid sequence MEMGTQLTEPTQHLQKLDTRAWCHPPRLAHATLAEDQITPPSYPAPCLPLLSPSCFLSLS
LSLSLSLSLSQLKAQLSLKRGVEGVERPSWGRGV
Secondary structure LLLLLLLLLLHHHHHHLLLLLLLLLLLHHHHHHHHHLLLLLLLLLLLLLLLLLHHHLLLL
LLLLLLLLHHHHHHHHHHHLLLLLEELLLLLLLL
PRMN LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHH
HHHHHHHLLLLLLLLLLLLLLLLLLLLLLLLLLL
PiMo oooooooooooooooooooooooooooooooooooooooooooooooooTTTTTTTTTTT
TTTTTTTiiiiiiiiiiiiiiiiiiiiiiiiiii