NONHSAT053456
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT053456 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
984 nt |
Genomic location |
chr17+:37712562..37723814 |
Exon number |
3 |
Exons |
37712562..37712666,37721013..37721117,37723041..37723814 |
Genome context |
|
Sequence |
000001 CAAGATTCCA GCCTCGGTCA CCACCCTGAC CCTGAGAATG CCACTGGGAT GGGGAGAACT TGTCAGTCTT CATCCTTCCC 000080
000081 CACAAGTATA CTGAAGCCAG GACAGCACCT GCCTTAGAGA GCTCTTAGAG GGATTATCCG CAGCCTGAAG AAAGAAGGTT 000160 000161 ACAACTGAGG AAGAACTTCT GAACAGGGAA GAGTGGAAGA AAAGACTGCA GCTCAGCTCC AGAAGCAGAC CCAGAATGGC 000240 000241 ATCCTTCTCT GAGACCCAGA CCCCAGCCCC TTTTCATGGA AGACCAGCAC AAAGGAGGAA GTAGGTTAGG GAATGGTAAG 000320 000321 GCTCCATGTG ATGGGACTAA TGTGGAGAGG CCTGGGGCCT TTCCCTGAGG ACTGGATGGC TGGAGTTTGG GAGCCTGAGT 000400 000401 TGACAGAGGA GGCTAAGCCC GGGCAGCTAC TTTGTTCCAG AAATCTAAGG TCCCTGGAGG GAGGCTCTGC TTTGGGAGGG 000480 000481 GGAAGGGAGC TAACATTGCA GAGCACCAAC TGTGAACCAG GTACAATGGC AGAGCCTTTC CATACCTGTA CTCACAACTA 000560 000561 GCGGGTGAGG AGTCAAGGCA AATAGGTGTC TCATAGCTCC CCATATCTCG GCAGTCGACC ACCTCCTCCT TTGATTCTCT 000640 000641 GATGTCACTG CCAGTTCTCC TCCTATTGCT CTGACCTGTC TTTCTCTGTG tcctttgcaa actcattctc aactccttag 000720 000721 actcagtcaa gtcccccagt tacacacttc catggtacta tatatcattc cttcagagca cttaacacag ttatttccta 000800 000801 tgtatttgtc cagtcatttg aataatgatc ctagtttcat tggatggaaa gttccacaag gtcagtgacc atttctatct 000880 000881 gtgttcacca atgtgttccc agtgcccaga aacaatgcct agcataaagc agctgttttg taaatacttg ttcaatgaat 000960 000961 gaatAAATGA CAAAAGAACA TCTC |
Predicted Small Protein
Name | NONHSAT053456_smProtein_824:961 |
Length | 46 |
Molecular weight | 5260.2006 |
Aromaticity | 0.133333333333 |
Instability index | 56.7335555556 |
Isoelectric point | 6.69195556641 |
Runs | 9 |
Runs residual | 0.0377525252525 |
Runs probability | 0.0279397044103 |
Amino acid sequence | MILVSLDGKFHKVSDHFYLCSPMCSQCPETMPSIKQLFCKYLFNE |
Secondary structure | LEEEEELLLEEEELLEEEELLLLLLLLLLLLHHHHHHHHHHHHLL |
PRMN | - |
PiMo | - |