NONHSAT053457
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT053457 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1471 nt |
Genomic location |
chr17+:37720419..37723812 |
Exon number |
2 |
Exons |
37720419..37721117,37723041..37723812 |
Genome context |
|
Sequence |
000001 CCCTCCTTTG TAGTCTTAAT AGGTCACTTT AGGACCAAGT GAGACCAGCT TTTGTGGCAC TACCCCCCAA CCTTTCTATG 000080
000081 GGCTCTCTCC CTCAAATCAG AAGTTGAGGG TCAGAGAAGG GAGTCTATGA TAGTGTGTGT CCCAAGAGGG GGTTACAGAG 000160 000161 AAGCCATAAG CAAAACAAGG CCAGGATTGT TTCTGGGTTG CTATGGAAAC CAGGTTCCCT CCTCCTGGCA GGAATGGAGG 000240 000241 AGTGCCTAAG GCCTTCCTCC TACCACCAAT CCTGAGGGTT GTAAAGGCGG AGTTTGCTAA GGCCTGGGGA AAGGGCTGGT 000320 000321 CTTGGAGGAC AAACCAACCA TTCCCTATAG CTGGCCTGCT ATTCAGAGGT CTTTGACCCC CACCTTTCCT ACCCTCCCAC 000400 000401 CTCTATATTC AGTCAAAGGA GGCTTTTTCC TCTGGTACCT TGTCCTCTAT AGAGACCTGT TGCTTAGCAA CCACTAGTGC 000480 000481 TTTCTTCTTA ATAACTAACA CGGACGGAGA GATAAAATAT CTGTGTCTAT ATTCAGTTCC CCTCCCCTGT CTATTTATAT 000560 000561 TTAATAACTG AAACCCTGTC TTGGGTTCCC TTAGCACCTG CCTTAGAGAG CTCTTAGAGG GATTATCCGC AGCCTGAAGA 000640 000641 AAGAAGGTTA CAACTGAGGA AGAACTTCTG AACAGGGAAG AGTGGAAGAA AAGACTGCAG CTCAGCTCCA GAAGCAGACC 000720 000721 CAGAATGGCA TCCTTCTCTG AGACCCAGAC CCCAGCCCCT TTTCATGGAA GACCAGCACA AAGGAGGAAG TAGGTTAGGG 000800 000801 AATGGTAAGG CTCCATGTGA TGGGACTAAT GTGGAGAGGC CTGGGGCCTT TCCCTGAGGA CTGGATGGCT GGAGTTTGGG 000880 000881 AGCCTGAGTT GACAGAGGAG GCTAAGCCCG GGCAGCTACT TTGTTCCAGA AATCTAAGGT CCCTGGAGGG AGGCTCTGCT 000960 000961 TTGGGAGGGG GAAGGGAGCT AACATTGCAG AGCACCAACT GTGAACCAGG TACAATGGCA GAGCCTTTCC ATACCTGTAC 001040 001041 TCACAACTAG CGGGTGAGGA GTCAAGGCAA ATAGGTGTCT CATAGCTCCC CATATCTCGG CAGTCGACCA CCTCCTCCTT 001120 001121 TGATTCTCTG ATGTCACTGC CAGTTCTCCT CCTATTGCTC TGACCTGTCT TTCTCTGTGt cctttgcaaa ctcattctca 001200 001201 actccttaga ctcagtcaag tcccccagtt acacacttcc atggtactat atatcattcc ttcagagcac ttaacacagt 001280 001281 tatttcctat gtatttgtcc agtcatttga ataatgatcc tagtttcatt ggatggaaag ttccacaagg tcagtgacca 001360 001361 tttctatctg tgttcaccaa tgtgttccca gtgcccagaa acaatgccta gcataaagca gctgttttgt aaatacttgt 001440 001441 tcaatgaatg aatAAATGAC AAAAGAACAT C |
Predicted Small Protein
Name | NONHSAT053457_smProtein_1313:1450 |
Length | 46 |
Molecular weight | 5260.2006 |
Aromaticity | 0.133333333333 |
Instability index | 56.7335555556 |
Isoelectric point | 6.69195556641 |
Runs | 9 |
Runs residual | 0.0377525252525 |
Runs probability | 0.0279397044103 |
Amino acid sequence | MILVSLDGKFHKVSDHFYLCSPMCSQCPETMPSIKQLFCKYLFNE |
Secondary structure | LEEEEELLLEEEELLEEEELLLLLLLLLLLLHHHHHHHHHHHHLL |
PRMN | - |
PiMo | - |