NONHSAT053513
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT053513 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
574 nt |
Genomic location |
chr17-:38192154..38210661 |
Exon number |
4 |
Exons |
38192154..38192407,38209551..38209633,38209722..38209910,38210614..38210661 |
Genome context |
|
Sequence |
000001 GACAAGTGCC AAAATGGCGA TGCCTACCAC CTAGAACTGG ATTGTGCGCT CCATTTCTTT CACCTCAAAG CTGGCCGCCA 000080
000081 CCGCTGCCAC CTGCTCAGAG TGAAATAATG AAGGTGGTCA ACCTGAAGCA AGCCATTTTG CAAGCCTGGA AGGAGCGCTG 000160 000161 GAGTGACTAC CAATGGGCAA TCAACATGAA GAAATTCTTT CCTAAAGGAG CCACCTGGGA TATTCTCAAC CTGGCAGATG 000240 000241 CGTTACTAGA GCAGGCCATG ATTGGACCAT CCCCCAATCC TCTCATCTTG TCCTACCTGA AGTATGCCAT TAGTTCCCAG 000320 000321 ATGGTGTCCT ACTCTTCTGT CCTCACAGCC ATCAGTAAGG TATGACCATA GACACTCAGG AGCTAGATTG GGGATGACAG 000400 000401 ACAAGGCCCC GCCTCCTTGA CGGCCCTGAT GCTGTGACCC GTGAGGCTGG ATAGGCAGCA CATGATGCCT CTGGCTGGCA 000480 000481 TTGCTGGACT TCCATGGGAG GGGGATCCTG GCAAGTAGGG GCTGGTGCTT GGGAGCCAAT GTCCAGTGTT GAGGATGCTG 000560 000561 AGTCTGGAAC CCAG |
Predicted Small Protein
Name | NONHSAT053513_smProtein_107:364 |
Length | 86 |
Molecular weight | 9664.2922 |
Aromaticity | 0.117647058824 |
Instability index | 40.7188235294 |
Isoelectric point | 9.52276611328 |
Runs | 11 |
Runs residual | 0.00713012477718 |
Runs probability | 0.0293876764465 |
Amino acid sequence | MKVVNLKQAILQAWKERWSDYQWAINMKKFFPKGATWDILNLADALLEQAMIGPSPNPLI LSYLKYAISSQMVSYSSVLTAISKV |
Secondary structure | LLLHHHHHHHHHHHHHHHHHHHHHHHHHHHLLLLLLHHHHHHHHHHHHHHHHLLLLLHHH HHHHHHHHHHLLEEHHHHHHHHEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLLHHH HHHHHHHHHHHHHHHLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiTTT TTTTTTTTTTTTTTToooooooooo |