NONHSAT053643
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT053643 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2466 nt |
Genomic location |
chr17+:39821818..39824283 |
Exon number |
1 |
Exons |
39821818..39824283 |
Genome context |
|
Sequence |
000001 AGCCTTGGAT TCATCATGGC TTCGACATCG CCGGCCCTGG GCCAGTGTTC GAGAGCATGG CCCCAAACAG TTCTTGCTCT 000080
000081 GTTCAGCTCC CCACATTGCC AAGCTGCGAG CGGGCTCTCT GTGCTTCCTG CCTTCTGTCT GCCTCGCCTG TTCTCTCCAG 000160 000161 GTAGGCGGCT CCTCCTCCAA GCTCCCCCAG CCCTGGGCTG ACCTCTGTCA CCTGGATGGT GGGTGCGGGT TCTCCGGGCA 000240 000241 TGCACCTCGT TCCCCTCTTT ACTCCCAGCA GTGGCTGAAA CTTGTGGGTG CTTGATCGTG CTAGTTAAAT GAATGAACAT 000320 000321 GTGGTGGTTA CAGGCAAACC CACAATGCCA CACAGGACAC CGACCAACAA CTGAAAACGG TGACAGCTGC CCTTACCCGC 000400 000401 AGCTCCCCAG CGTAGCCCTC CCCCATCGCA GCCAGACCGG CTTGCCCACT GCGCAGCAAG GCGGAGCCCC GCACAGCTAA 000480 000481 GCCCGGGCGT GGTGCTCGCG GCGCCCTCTG CTGGCCGGGC CCACGGCCTC CTCCTGCGCA CGCGCGCCGC CACCCCGGGA 000560 000561 CCAGACCTAA AGGGAGAAGG CGCGATCTGG GGCCCTCCCT CCGCACCCCC TCGCCCCGAG AAGCCCCAAA CCCAGGTCTT 000640 000641 TGACCCTCAT GAACATCCTT TGTCCTTCCT CTCTCCTGCT CCCCCTGCAA ACATTTTAGG CATCCCTAAA TGATCACCAG 000720 000721 CCCTCGCCTG CTCTCTTAGC AGGCCTCCAG GTGGGGTTAG AATTGTCAAA TGCTGGCACA GGACGAAACC CTAATAATAA 000800 000801 TAACTATGAT GATGACGGCA GCTGCTGCTG AGCGGGCACT TTGTGGTTAC CTTAGCAACC TTCCACCATC CAGGAAGTGC 000880 000881 AGCCCCTTCT TTCACAGGCG GCAGCTGCAG CCAGAGGCGT GCGGGGACTT CCCAAGGTCA CACAGCAAGA ATCCTAAGAA 000960 000961 ACCCGGGGTG TTTCCTCTGC CTACGTGGAG CTAACCCTGC CTCCAGAAGC AGGGGCCTTG AGATGGGAGC AGAGCGATCT 001040 001041 GGTGCCCCGG AAACCCCACC CCCACCCCCA CCTTGCCCCA TGCGCAGCGA ACGTGGCTAC ATTTCCTATC GTTTGTCCAA 001120 001121 CCCATCATTT TGCCTTTGGG AAAATTGCAG GGGAGGTGGA GGCCAGAGGA CAGGGAGACA AACGTTCGTG GGCATCTGCC 001200 001201 ACGAGCACAT TTGCCACGCT TTGTGACAGG CCCTTTCCCG TTACACACCA CACCTGCCCA GGACCGCAGC ACAGAACCAG 001280 001281 GACCCAAACC CGCCGACTCC CTCCCTAGTG CTCCTTCCTC ACCCCCCACC CCCTCCCCCC TCCGCAAGTT CTCTCTTGGA 001360 001361 AAAGGGGCCG CTGGGAAGGG GAGGAAACGC ACTCACTACA GGACTCCAGG TGGGGTCCAG AGGCTCTGCC CCTGGTGCCT 001440 001441 CTTCCCCAGC CCTAAAGCCC CCAGCCCTAG AGAGGGGACC CTCCTGCACA ACATCTCCAG GGGACCGGGT ACTCCACTAG 001520 001521 GGTCGAGAAA CGTTGAATAG TGCGGTGGGT GCGGGAGGCG CGCCTAGGTG CCGAAACCCG GTCTGTGCTG CCATCCTGTG 001600 001601 GCCATTGCAG GAAGTGTGCC TGTCAGGCCG CTCTGCATTG AACCTGAAAT GCCGGGTCAC CCTTGGGTTG AGTGAAACCG 001680 001681 GGCCCCATGC TGAGGCTACA AGGGACATAG AAAGGGACAA GACGCAGCCC GTGCCCTGAA AGAGCTTACA GTTCGGTAGG 001760 001761 ATGGCCTTCA AATGACATGA TCCAACACTC AACTCGGCGC CAGATACCGC CCAAAATAGA AGATCGTGCA AAAGGTTCCA 001840 001841 AAAGGTGGAG GCAGCCTGCC CCGAAGCACA TCGAGAAAGC CCTCCTGCAG CAAAGCCGTG TCGAGACTGG GCCTTACAGG 001920 001921 GCAGGCGGGG CTGGGGCAAA CAGAGATGAA GGAAGGCGCT CCAGGCGGAG AGACCAGCCT GAGCAAAGGC ACAGGGGCAG 002000 002001 GAAACACGGA TTCTCAGGAA TCCAGCTTGT CCCAAGTCTA GGTCAACTGT GAAGGGGAGA GCAGCATGGC CAGGTCCTCC 002080 002081 AGTGCCCAGG TAGGAGGTTT CACTTAACCC TTTAGGCCAC GCGGCCAACA AAGGTCTTTG AGCAAGCCAG CAGCTTGACC 002160 002161 AGAAGTCTGT CCAGGAAAAG AGCATGATAG CTGGGGAACG GGGGCAAATG GGTGAGGTTT CAGAGCAATT AGGAAGGAAG 002240 002241 GAGAACAGGA GGAGGCATGA GCGACGCGGA TGGTGGTGCC ACTGGCAGAG CTGGGAAGTC AGGGGCCACG CAGGGGAGAC 002320 002321 CAGGGCTGGG GTTTAAGTTC CTGGCAGAAC ATCCCAGTGA AGACGTCCTT CAGGAAGCCA GAAAGAATAC ATTAATAAAA 002400 002401 GAGGAAGTAA TAGTTATTGC TCATATGTGT ACAGACTTTA TAGTAAATAA AGCAGCTTAA TCCATC |
Predicted Small Protein
Name | NONHSAT053643_smProtein_1022:1225 |
Length | 68 |
Molecular weight | 7355.2841 |
Aromaticity | 0.0746268656716 |
Instability index | 66.3507462687 |
Isoelectric point | 8.39788818359 |
Runs | 9 |
Runs residual | 0.00898648120653 |
Runs probability | 0.0455062906044 |
Amino acid sequence | MGAERSGAPETPPPPPPCPMRSERGYISYRLSNPSFCLWENCRGGGGQRTGRQTFVGICH EHICHAL |
Secondary structure | LLLLLLLLLLLLLLLLLLLLLLLLLEEEEEELLLLEEEEELLLLLLLLLLLLEEEEEELH HHHHLLL |
PRMN | - |
PiMo | - |