NONHSAT053664

From LncRNAWiki
Jump to: navigation, search

Please input one-sentence summary here.

Annotated Information

Transcriptomic Nomeclature

Please input transcriptomic nomeclature information here.

Function

Please input function information here.

Regulation

Please input regulation information here.

Expression

Please input expression information here.

Allelic Information and Variation

Please input allelic information and variation information here.

Evolution

Please input evolution information here.

You can also add sub-section(s) at will.

Labs working on this lncRNA

Please input related labs here.

References

Please input cited references here.

Basic Information

Transcript ID

NONHSAT053664

Source

NONCODE4.0

Same with

,

Classification

intergenic

Length

4817 nt

Genomic location

chr17+:40075274..40080090

Exon number

1

Exons

40075274..40080090

Genome context

Sequence
000001 GCGGCGAGAA CGGCCCCGCG ATTGGCCACA CGCGTTCCCT AGCCTGAGCG CCAGGGCTCC TCCCAATTCG CTGCTGGCTT 000080
000081 GGCTCCGCCC CACGAGGGCG GGCCCCGGGG CCTGCTGGGA CTTGTAGTCC CGCTGGCCCA TCCACCGCCT CTTGGGAGCC 000160
000161 Tgcggggccg gggcggggcc ccgggTGGGG AGATGGGCCG GGCTAGGCTG GGAGGAGAAC GCGCGGTGCT GGGGGTTGTG 000240
000241 GCCTGATCGC TTGAGGGGCT GGACAGATTG CCACTCGGGG AGTTGGGGGA GGGGCGGGTA GGATTAGCCC AACTGGCTGT 000320
000321 AACGCAGCTT TGGGACCTGG AGTACCCTTG CTCCTTCCCT TGGGAGAAAC GGACGTCTGC ATCTCGGCCG CACCGAATCC 000400
000401 GATTGCTTAG ACAGTCTCCT TAAGCAGCAG TGTCTGGCAG GCCGCTTTCC TTTAGCACGT GGAGCCTCTC TCCTCCCTGG 000480
000481 ACTCTCCCCA CTGGGCCGAT GAGGCAAGGC TGAGCCGAGG CTAACAGAGC ATACTTCCCA GTGTGGGATA AGGCAGGGGC 000560
000561 CGCGGTAAGC AAGTGGGGCT AGGAGGGTGC AGGCACAGCG CTGTCCGTCC CACTCACCTG CTCGCCTCAG CACGGATCAG 000640
000641 GGCGGAGCTA GGAATTCAAT GCGAGATTCC AGCGAAGGGC TGGAGCCATC CCAGACAGTC TCTTGTTCCC ACCAACCACA 000720
000721 GGCTTAGACA CTGGAATGAA TGAACTGCTG TCTCCCCCTT CTCCATTACC TGAGACAgat cgaattttcc aaaccaaaaa 000800
000801 ctgggacatc caatctgaca ggtgctggtg aacttgtggg gcagaatatg tgaaatcagt cctggaaatc aggacatgta 000880
000881 tttaccaCTC TGACATGCTG CAGCCTCCCT CCCTACCTGC ACCCCAACCC TGTAGGTCCG GAGCTGCTCC CTAAGCCTAA 000960
000961 CAGCTGTCTA GCTCCAGGAA GGAGGCCAAA AGCGTCCACT GACCGACTCA GGTGAAGAGG TCAGCCCAGA ATGCAGGGAA 001040
001041 GCAGCAGGCC TGTCCCCCTG CCAAGCACTT TGGGTCATAC TCACACTGCA ACAGTGTTGC GACATTTGCA GACAAAATCT 001120
001121 TCTCCAAGAC CCCCTCCCCC AATCCTGTTG CTGCCAGGAG TAAGGTAACT GAACTTGCTA CCCATGCCTG AATCAAGTGT 001200
001201 TCCCTGATGA TGTCACTTTC TGGTCCCTTC CCTCCCATTC ATCTTTTTGA AATAGCAGTT CCTTATCACC TCTCTTCTCT 001280
001281 TGTCCTAAAA TGGGGGTggc cagtcttggt ggctcacacc tgtaatccca gcactttgga aggccaaggt gggggatcac 001360
001361 ttgaggtcag gagttcaaga ccaacaaggc aaaaccccat ctctacaaaa aatacaaaaa ttagccaggc atggtggcac 001440
001441 acgcctataa atcccagcta ctcttgaggt tgaggcatga gaatcgctta aacccgggag gtggaggttg cagtgaggtg 001520
001521 agattgcacc actgcactcc aacctgggtg acagagaagg attctatctc aaaaaaaaaa aaaaaaaaaa aaagaTACAC 001600
001601 TCCAggcaag gcatgctgtc tcatgcctgt aatcccagaa ttttggaagg ccaagtcagg cagattgcta gagcccagaa 001680
001681 gttcaagtac agcctgggta acatggtaag agcccccacc accaccatca aatctctaca aaaaataaaa agaccgggcg 001760
001761 tggtgattca catgcctgta atcccagcaa tttgggaggc ctaggtgggt agatcacctg agttcgaggt caagcgttcc 001840
001841 agaccagcct ggccaacagg tgaaaccctg tttctactaa aaatacaaaa aattagctgg gcgtggtggc aggtgcctgt 001920
001921 aatcccagct actcaggagg ctgagtcagg agaatcgctt gaacccagga ggcggaggca ggagaatcgc ttgaacccag 002000
002001 gaggcggagg caggagaatc gcttgaaccc aggaggcgga ggttgcagtg agccgagatc gcaccagtgc actctagcgg 002080
002081 gggcaacaag accaaaactc catctcaaag caaaaaaaaa aaaaaaattt agctgggcac tgtatcgggt gcctgtaatc 002160
002161 tcagctacct gggaggctga ggcaggagaa ttgcttgaac ccaggaggca gaggttgcag tgagcagaga tcgtgccatt 002240
002241 gcactccagc ctgggccaca gagtgagact ccgtctcaaa acaaaacaaa acaaaacaaa aaaataaaca aaaattagca 002320
002321 gggcatggtg gtgcacacct gtagtcccag ctacttggga gaccgaggtg gaaggatcac ttgagtccag gagatcaagg 002400
002401 ctgcagtgag ctgagattgt gcactccagc ctgggcgaca gggtgtgacc ctgtctcaga aaaaaaaaaa aaaaacaaaa 002480
002481 aagaaaaAaa ggaaaagaaa agaaagaagg aaggaaggaa ATACTCCTGG GAggccaggt gcataggctc aggcctgtaa 002560
002561 tcccatcact ttgagaggcc aaggagggct tgagcccagg agttccaacc cagccttggc aatacagtga gtctatgtca 002640
002641 ctacaaaaaa taaaaaaTTA GCTGGGCAgc tgggcatgct ggctcacgcc tataatccga gcactttggt aggccaaggt 002720
002721 gggaaaatca cttgcgtcca ggagttcaaa accagcctgg gcaacatagt gagtcactgt ctcaaaaaaa aaaaattagc 002800
002801 taggcatggt ggcacacacc tgtagtccaa gctactcagg aggcagaggt gggagaatca cttgagccca ggaggtcaaa 002880
002881 gacgcagtga gctGGGTggg cacggtggct cgagcctgta atcccagcac tttgggaggc tgaggcaggc agatcacttg 002960
002961 aggccaggag ttcgagacca gcctggccaa catggcaaaa cccatctcta ctaaaaatac aaaaaattag ctggatgtgg 003040
003041 tggcacatgc ctgtaatccc agttactcgg gaggctggct gggtgcagtg gctcacgcct ataatcccaa cacttgggga 003120
003121 ggccgaggcg ggcggatcac aaggtcagga gattgagact atcctggcta acaaagtgaa acccaagctc tactaaaaat 003200
003201 acaaaaaaaa tagccgggca tggtggcacg tgcctgtagt cccagctact caggaggctg aggcaggaga atcgtttgaa 003280
003281 cccaggaggc ggaggttgca gtgagccgag atcacgccac tgcactccag gctgggtgac agagcgagac aaaaaaaaaa 003360
003361 aaaaaaaaaa aagatgcagt cagccgtgac tgcaccactg aacatcagcc tgggtgacag agtgagaccc tgtatgagaa 003440
003441 aaaaaaaaag aaagacaaaT ACACTCCtgg ggaaatggtc atccaggcgg gacataaaat ataataaact ctttgaaggt 003520
003521 caatttggta atatcagtaa acattttaaa ttcacttgcc ctttggtcca gtaattccac ttctaataat ttatccttca 003600
003601 gatatacttg cgtatgtgca tgacgaAgat agggatcttt gtctattttc ttcattgctg tatttctagc agtttaaata 003680
003681 gggactggtt acacagtaag tactcaataa atgtttgctg aatgattgTC CTCCATTTAG GTGTTGCTAG GCCTAAGTTT 003760
003761 GACTATTCCT GGGCAGGAAC AACAAAAAAT AACTGTCCAG AGAGTGAGGG GGAAGAGGTG CTGGCCAGAG GGCCCATGAG 003840
003841 CCAGCCACTG AGGTTTTCCA GTTCACTCAG TGGTCTCATA CCAAGTTTCT GCCCCCAACG CCCAGCCTCC TCAAGTAAGA 003920
003921 CTCTCTCATT ACCCCACCAT GCACCCACAG AGGTTCATCT GCCTTGAATT AATCAATCTA GAACCCATCT TCTCATCATT 004000
004001 CTATTTTCTA ACTTAAAAGC TCTAAACCAg gctgggtgca gtggctcacg cctgtaatcc caacactttg ggaggccaag 004080
004081 gcgggtggac tgcctgagct caggagttca aaaccagtct ggctaacatg gcaaaacccc catctctaca aaaaataaaa 004160
004161 aatAAAATAA AAGCTCTAAA CTCTTTTGAT TTTCCCATTT GAATCACCTC CCTCCTCTTC TAGACTGGAC TAGAGGACAG 004240
004241 GTCCCTATCA GAATACAGAG GGTTATAGGC ACCATCTCCA AGCCCAGGTT TGGGCATTCC ACCTGGGTTC CAGAAGCCTA 004320
004321 AAACTGGCTA AGGACTTCCT CCTAGATTTG GACCAATttt agttaatatt tattgagcac ctactatgtg aaaggcaTAC 004400
004401 TACTCACAGC AGCCACTTGA GCTAACTAAG TGTTTTCATC ATTTTGCCTA TGATCAACTA ACCTAATGAT CTTCAGACTC 004480
004481 CAAGTCCTTG GGCCTGTACC CTGCAACCTG CTGCAGGTGA GTAAGAGGGA AAGATCCTAT CCAGTGGAtc tcctttatct 004560
004561 gactgtaagc aacccaaggc ctaggagagt gccttgttca ttttggcatc tccagtgcct agcatgggac tggacacata 004640
004641 ttaagcattc actgtaaaca tGACTAAAAA AAGGCTCTTA TAATATGTGA ATGAAAGAAA GCAATTGTAG GGGAAGGGCA 004720
004721 GGGAGAGGAG GGAGGAGATG CAGCCTGGAG AAGGGTCTAC CTAAGTGTCC AGTTCTACTA tttttttgtt tgtttgtttg 004800
004801 tttgttttga gagggag
[back to top]

Predicted Small Protein

Name NONHSAT053664_smProtein_1430:1708
Length 93
Molecular weight 10532.2741
Aromaticity 0.0760869565217
Instability index 50.3489130435
Isoelectric point 10.1466674805
Runs 17
Runs residual 0.0495777291211
Runs probability 0.0443332605963
Amino acid sequence MVAHAYKSQLLLRLRHENRLNPGGGGCSEVRLHHCTPTWVTEKDSISKKKKKKKRYTPGK
ACCLMPVIPEFWKAKSGRLLEPRSSSTAWVTW
Secondary structure LLHHHHHHHHHHHHHHHLLLLLLLLLLLEEEEELLLLLEEEELLLHHHHHLLLLLLLLLL
EEEELLLLHHHHHHLLLLEELLLLLLLLEEEL
PRMN -
PiMo -