NONHSAT053664
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT053664 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
4817 nt |
Genomic location |
chr17+:40075274..40080090 |
Exon number |
1 |
Exons |
40075274..40080090 |
Genome context |
|
Sequence |
000001 GCGGCGAGAA CGGCCCCGCG ATTGGCCACA CGCGTTCCCT AGCCTGAGCG CCAGGGCTCC TCCCAATTCG CTGCTGGCTT 000080
000081 GGCTCCGCCC CACGAGGGCG GGCCCCGGGG CCTGCTGGGA CTTGTAGTCC CGCTGGCCCA TCCACCGCCT CTTGGGAGCC 000160 000161 Tgcggggccg gggcggggcc ccgggTGGGG AGATGGGCCG GGCTAGGCTG GGAGGAGAAC GCGCGGTGCT GGGGGTTGTG 000240 000241 GCCTGATCGC TTGAGGGGCT GGACAGATTG CCACTCGGGG AGTTGGGGGA GGGGCGGGTA GGATTAGCCC AACTGGCTGT 000320 000321 AACGCAGCTT TGGGACCTGG AGTACCCTTG CTCCTTCCCT TGGGAGAAAC GGACGTCTGC ATCTCGGCCG CACCGAATCC 000400 000401 GATTGCTTAG ACAGTCTCCT TAAGCAGCAG TGTCTGGCAG GCCGCTTTCC TTTAGCACGT GGAGCCTCTC TCCTCCCTGG 000480 000481 ACTCTCCCCA CTGGGCCGAT GAGGCAAGGC TGAGCCGAGG CTAACAGAGC ATACTTCCCA GTGTGGGATA AGGCAGGGGC 000560 000561 CGCGGTAAGC AAGTGGGGCT AGGAGGGTGC AGGCACAGCG CTGTCCGTCC CACTCACCTG CTCGCCTCAG CACGGATCAG 000640 000641 GGCGGAGCTA GGAATTCAAT GCGAGATTCC AGCGAAGGGC TGGAGCCATC CCAGACAGTC TCTTGTTCCC ACCAACCACA 000720 000721 GGCTTAGACA CTGGAATGAA TGAACTGCTG TCTCCCCCTT CTCCATTACC TGAGACAgat cgaattttcc aaaccaaaaa 000800 000801 ctgggacatc caatctgaca ggtgctggtg aacttgtggg gcagaatatg tgaaatcagt cctggaaatc aggacatgta 000880 000881 tttaccaCTC TGACATGCTG CAGCCTCCCT CCCTACCTGC ACCCCAACCC TGTAGGTCCG GAGCTGCTCC CTAAGCCTAA 000960 000961 CAGCTGTCTA GCTCCAGGAA GGAGGCCAAA AGCGTCCACT GACCGACTCA GGTGAAGAGG TCAGCCCAGA ATGCAGGGAA 001040 001041 GCAGCAGGCC TGTCCCCCTG CCAAGCACTT TGGGTCATAC TCACACTGCA ACAGTGTTGC GACATTTGCA GACAAAATCT 001120 001121 TCTCCAAGAC CCCCTCCCCC AATCCTGTTG CTGCCAGGAG TAAGGTAACT GAACTTGCTA CCCATGCCTG AATCAAGTGT 001200 001201 TCCCTGATGA TGTCACTTTC TGGTCCCTTC CCTCCCATTC ATCTTTTTGA AATAGCAGTT CCTTATCACC TCTCTTCTCT 001280 001281 TGTCCTAAAA TGGGGGTggc cagtcttggt ggctcacacc tgtaatccca gcactttgga aggccaaggt gggggatcac 001360 001361 ttgaggtcag gagttcaaga ccaacaaggc aaaaccccat ctctacaaaa aatacaaaaa ttagccaggc atggtggcac 001440 001441 acgcctataa atcccagcta ctcttgaggt tgaggcatga gaatcgctta aacccgggag gtggaggttg cagtgaggtg 001520 001521 agattgcacc actgcactcc aacctgggtg acagagaagg attctatctc aaaaaaaaaa aaaaaaaaaa aaagaTACAC 001600 001601 TCCAggcaag gcatgctgtc tcatgcctgt aatcccagaa ttttggaagg ccaagtcagg cagattgcta gagcccagaa 001680 001681 gttcaagtac agcctgggta acatggtaag agcccccacc accaccatca aatctctaca aaaaataaaa agaccgggcg 001760 001761 tggtgattca catgcctgta atcccagcaa tttgggaggc ctaggtgggt agatcacctg agttcgaggt caagcgttcc 001840 001841 agaccagcct ggccaacagg tgaaaccctg tttctactaa aaatacaaaa aattagctgg gcgtggtggc aggtgcctgt 001920 001921 aatcccagct actcaggagg ctgagtcagg agaatcgctt gaacccagga ggcggaggca ggagaatcgc ttgaacccag 002000 002001 gaggcggagg caggagaatc gcttgaaccc aggaggcgga ggttgcagtg agccgagatc gcaccagtgc actctagcgg 002080 002081 gggcaacaag accaaaactc catctcaaag caaaaaaaaa aaaaaaattt agctgggcac tgtatcgggt gcctgtaatc 002160 002161 tcagctacct gggaggctga ggcaggagaa ttgcttgaac ccaggaggca gaggttgcag tgagcagaga tcgtgccatt 002240 002241 gcactccagc ctgggccaca gagtgagact ccgtctcaaa acaaaacaaa acaaaacaaa aaaataaaca aaaattagca 002320 002321 gggcatggtg gtgcacacct gtagtcccag ctacttggga gaccgaggtg gaaggatcac ttgagtccag gagatcaagg 002400 002401 ctgcagtgag ctgagattgt gcactccagc ctgggcgaca gggtgtgacc ctgtctcaga aaaaaaaaaa aaaaacaaaa 002480 002481 aagaaaaAaa ggaaaagaaa agaaagaagg aaggaaggaa ATACTCCTGG GAggccaggt gcataggctc aggcctgtaa 002560 002561 tcccatcact ttgagaggcc aaggagggct tgagcccagg agttccaacc cagccttggc aatacagtga gtctatgtca 002640 002641 ctacaaaaaa taaaaaaTTA GCTGGGCAgc tgggcatgct ggctcacgcc tataatccga gcactttggt aggccaaggt 002720 002721 gggaaaatca cttgcgtcca ggagttcaaa accagcctgg gcaacatagt gagtcactgt ctcaaaaaaa aaaaattagc 002800 002801 taggcatggt ggcacacacc tgtagtccaa gctactcagg aggcagaggt gggagaatca cttgagccca ggaggtcaaa 002880 002881 gacgcagtga gctGGGTggg cacggtggct cgagcctgta atcccagcac tttgggaggc tgaggcaggc agatcacttg 002960 002961 aggccaggag ttcgagacca gcctggccaa catggcaaaa cccatctcta ctaaaaatac aaaaaattag ctggatgtgg 003040 003041 tggcacatgc ctgtaatccc agttactcgg gaggctggct gggtgcagtg gctcacgcct ataatcccaa cacttgggga 003120 003121 ggccgaggcg ggcggatcac aaggtcagga gattgagact atcctggcta acaaagtgaa acccaagctc tactaaaaat 003200 003201 acaaaaaaaa tagccgggca tggtggcacg tgcctgtagt cccagctact caggaggctg aggcaggaga atcgtttgaa 003280 003281 cccaggaggc ggaggttgca gtgagccgag atcacgccac tgcactccag gctgggtgac agagcgagac aaaaaaaaaa 003360 003361 aaaaaaaaaa aagatgcagt cagccgtgac tgcaccactg aacatcagcc tgggtgacag agtgagaccc tgtatgagaa 003440 003441 aaaaaaaaag aaagacaaaT ACACTCCtgg ggaaatggtc atccaggcgg gacataaaat ataataaact ctttgaaggt 003520 003521 caatttggta atatcagtaa acattttaaa ttcacttgcc ctttggtcca gtaattccac ttctaataat ttatccttca 003600 003601 gatatacttg cgtatgtgca tgacgaAgat agggatcttt gtctattttc ttcattgctg tatttctagc agtttaaata 003680 003681 gggactggtt acacagtaag tactcaataa atgtttgctg aatgattgTC CTCCATTTAG GTGTTGCTAG GCCTAAGTTT 003760 003761 GACTATTCCT GGGCAGGAAC AACAAAAAAT AACTGTCCAG AGAGTGAGGG GGAAGAGGTG CTGGCCAGAG GGCCCATGAG 003840 003841 CCAGCCACTG AGGTTTTCCA GTTCACTCAG TGGTCTCATA CCAAGTTTCT GCCCCCAACG CCCAGCCTCC TCAAGTAAGA 003920 003921 CTCTCTCATT ACCCCACCAT GCACCCACAG AGGTTCATCT GCCTTGAATT AATCAATCTA GAACCCATCT TCTCATCATT 004000 004001 CTATTTTCTA ACTTAAAAGC TCTAAACCAg gctgggtgca gtggctcacg cctgtaatcc caacactttg ggaggccaag 004080 004081 gcgggtggac tgcctgagct caggagttca aaaccagtct ggctaacatg gcaaaacccc catctctaca aaaaataaaa 004160 004161 aatAAAATAA AAGCTCTAAA CTCTTTTGAT TTTCCCATTT GAATCACCTC CCTCCTCTTC TAGACTGGAC TAGAGGACAG 004240 004241 GTCCCTATCA GAATACAGAG GGTTATAGGC ACCATCTCCA AGCCCAGGTT TGGGCATTCC ACCTGGGTTC CAGAAGCCTA 004320 004321 AAACTGGCTA AGGACTTCCT CCTAGATTTG GACCAATttt agttaatatt tattgagcac ctactatgtg aaaggcaTAC 004400 004401 TACTCACAGC AGCCACTTGA GCTAACTAAG TGTTTTCATC ATTTTGCCTA TGATCAACTA ACCTAATGAT CTTCAGACTC 004480 004481 CAAGTCCTTG GGCCTGTACC CTGCAACCTG CTGCAGGTGA GTAAGAGGGA AAGATCCTAT CCAGTGGAtc tcctttatct 004560 004561 gactgtaagc aacccaaggc ctaggagagt gccttgttca ttttggcatc tccagtgcct agcatgggac tggacacata 004640 004641 ttaagcattc actgtaaaca tGACTAAAAA AAGGCTCTTA TAATATGTGA ATGAAAGAAA GCAATTGTAG GGGAAGGGCA 004720 004721 GGGAGAGGAG GGAGGAGATG CAGCCTGGAG AAGGGTCTAC CTAAGTGTCC AGTTCTACTA tttttttgtt tgtttgtttg 004800 004801 tttgttttga gagggag |
Predicted Small Protein
Name | NONHSAT053664_smProtein_1430:1708 |
Length | 93 |
Molecular weight | 10532.2741 |
Aromaticity | 0.0760869565217 |
Instability index | 50.3489130435 |
Isoelectric point | 10.1466674805 |
Runs | 17 |
Runs residual | 0.0495777291211 |
Runs probability | 0.0443332605963 |
Amino acid sequence | MVAHAYKSQLLLRLRHENRLNPGGGGCSEVRLHHCTPTWVTEKDSISKKKKKKKRYTPGK ACCLMPVIPEFWKAKSGRLLEPRSSSTAWVTW |
Secondary structure | LLHHHHHHHHHHHHHHHLLLLLLLLLLLEEEEELLLLLEEEELLLHHHHHLLLLLLLLLL EEEELLLLHHHHHHLLLLEELLLLLLLLEEEL |
PRMN | - |
PiMo | - |