NONHSAT053709
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT053709 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
sense |
Length |
1483 nt |
Genomic location |
chr17-:40538957..40540439 |
Exon number |
1 |
Exons |
40538957..40540439 |
Genome context |
|
Sequence |
000001 CCCAACCGGA TCCTGGACAG GCACCCCGGC TTGGCGCTGT CTCTCCCCCT CGGCTCGGAG AGGCCCTTCG GCCTGAGGGA 000080
000081 GCCTCGCCGC CCGTCCCCGG CACACGCGCA GCCCCGGCCT CTCGGCCTCT GCCGGAGAAA CAGGTGAAGG GGGTGCAGGG 000160 000161 TGGGGCCGTT GGGGAGGCCT GGGGACCCGG GGGCTCCGCA GCGGCAGGGG GCCTCTGGGA CCTTGGGGAT GTTGTGATGG 000240 000241 ACGCTGCAGT GGGGCCGGGA GAGATGAAGA GACGCGGAGG GTCGCCCTGA GGGAAGACTC TTCGGGATGA CAGGAGCGGG 000320 000321 CCTCGGAAGG GACTCGGGGC GCTGGAGGGA AGTTTCGTTC TTCGGAGAAA CAGAACGCGC TCGAGGGGGC ACCGTGGGGC 000400 000401 GAGGGCGCAC TCGGTTGCGG CGGCAGGAGT GAGGGACAGT CCCCCGATTT CCTGCTCCCT GGGGCCCTGG GGACGTTCCG 000480 000481 GCCACCGGAG CGACTGTCAC GCCGACGGGG ATCACCGGCG CGAGTGGGGG GTCGGAAAGC GCCTCCTCCC CGCCCGGTCG 000560 000561 GCGGCTCCCG CTGAGCCACT TCCTCCGCTT GCCCTGTTCC CGCTCCTTCA GGAGACAGCT GTGCCCTTTT GGAGGCAGGA 000640 000641 ATAGGTGTGT CTGTCGCCTG CAGCCTTACG GGCTGGCTGG TCGTGGGTAG GCTTTATTGC ATAAGAATCA AGTTTCCTGT 000720 000721 AGGGAAATTG ACAGACCGGT ACTCTTTCTA AATTCCCTCG CATCTTTTTC TAGGTTAAAT TATGCTCCCC CCACGTCCCC 000800 000801 GCCTTGTAAA AAAGAGAAAA AAAGACAAAA TAAAATCCCC ATCAACCCGT CAAGCCAGCT CTAGAGAGAG AAATAAACCT 000880 000881 CTTGACATTG TCCTTTTCCA AATACCTGGT AAAGTCGGCC AGAAGATAAA TAATTGAGCC ATTGCATTTA CTGGATTGTG 000960 000961 GTGTTGCTTA ATTGCATAGG ACGGAATGAA CCAATTGAGA GTGGGAGTTT TCTGTCTCAG AGCCAAGATC TTGGGTAAAT 001040 001041 GCAGAGGAGA GGGAAACAAA GACAGGCTGG CCTTGAAAAA ACCATGTGTG CAAACTTTAC ATGCATTTGG GGGGTGTGGT 001120 001121 TGCACTGAAG TTAACAAGAT TCAAACCGTC GCCCAAGTTG GTATTTCCAT GTTTGGTACA CATCACTCTG TGCCATATCA 001200 001201 GGTCGTTGTT AAGTGTGGTG ACAAAATCAG TGGTTAGTCA TTTTTTTAAT TAAAAATGTG TATAGTGTGT ACCTGCTGGT 001280 001281 CTTACTGTAT GTGCAACTAA AGGTTTACAT AGTCTGTGTA TGGGTTGTAA ATTTTTGGCT GGCTGTGCTG ATAAAGCATT 001360 001361 GGGCTTGAAT AAAGCAAAGC AGAAAATCAT CTCAATCTTT TATATGTGGA TTTAGACTGT GTTATGACTT GGTTCAGCCA 001440 001441 GTTTTCTATC TTATTTTATA TTAAATATGT CTGTGTTCTC TGA |
Predicted Small Protein
Name | NONHSAT053709_smProtein_1100:1252 |
Length | 51 |
Molecular weight | 5571.761 |
Aromaticity | 0.08 |
Instability index | 62.064 |
Isoelectric point | 10.4805297852 |
Runs | 9 |
Runs residual | 0.0153216374269 |
Runs probability | 0.0424836601308 |
Amino acid sequence | MHLGGVVALKLTRFKPSPKLVFPCLVHITLCHIRSLLSVVTKSVVSHFFN |
Secondary structure | LLLLLEEEEEELLLLLLLLEEELLEEEEEHHHHHHHHHHHHHHHHEEEEL |
PRMN | LLLLLLLLLLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHLLLLLLLLLL |
PiMo | iiiiiiiiiiiiiiiiiiiiiiTTTTTTTTTTTTTTTTTToooooooooo |