NONHSAT053780
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT053780 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1844 nt |
Genomic location |
chr17-:41026691..41050751 |
Exon number |
6 |
Exons |
41026691..41026880,41029992..41030090,41030544..41031835,41036612..41036703,41046583..41046651,41050650..41050751 |
Genome context |
|
Sequence |
000001 AAGGGCTCGC ACCCAGCCCA TGCTGACTCC AGTTGTCCTT GACTGCATGG TTTCTGCTGG TCCAAGCAAA CTTCTCCTGC 000080
000081 CACGCCTAAC CTTGGAGAGC AGTGATCAAT GGAGGAAGTG TTTCATGGTG GACATGGGAA ACTGGCCAGA TCAACTGCTG 000160 000161 TCACCTTCTA AAGAGAGGGT TTTGCCATGT TGCCAGGCTG GTCTCGAACT CCTGGACTCA AGTGATCTGC CTGCCTCAGC 000240 000241 CTCCCAAAGT GCTGGAATTA TAGGACCCAG ACGGGGAGGA GGAATGCCAG AGAAGCTGCA GACTCTCCGG CCACGGAGCC 000320 000321 TGAGTGGAGC AGAGGTGGCC CACTGTCAGC CACAGGTCAA GTGTCAGGGT GGGGACGGGG CAGGCTCCAC CAGAAGGCGG 000400 000401 GGGCAGGCTC CACCAGAAGG CGGGGCCAGA CCACAGGGCA AGGTGGAGAT GAGTCTGTGG CACCCCCAGG AAGTTTACCA 000480 000481 GATTTGCCCC AGAGCTTCTG ACCCTTTGGA TCTCTCTGGG CTGCATTCTT CAGGGTCCCA TTGCTTCTTT CTTGAAGGTG 000560 000561 GAAGGAAATG TTCCCATCAG AGCCTTCCAA CAGGCCACCT TGGGGGCTTC TCCTGAGAGC TCCTTGTGCA CACACCCCTT 000640 000641 CAGGGTGGCT TGGGTTGCGC CCTCAGACCC CAGTGGGGGG CCGTATGGCA TCCTCCTTGG TCAGCAAGTG AGCCACAGCA 000720 000721 GCAGGCCCCT CACAGACCTC AGCCTGGGGC CACAGGTCCC TTCTCCCCAT CTCCGCATCT GGAGAAGCAA CCTGTGGAGC 000800 000801 AGCCAAGAGT GGCAGCCCTG GCTCTCTACA GCATTCATTT TCAGGGCAAG ACAGAGCATT TCCACTATTA TGCTCCCCCC 000880 000881 CCCGGCCTTT TTTTTTTTTT TTTGAGACAG GGTCTCACTC TGTTGCCCAG GCTGGAGTGC GGTGGCGCAA TCATGGCTCA 000960 000961 CTGCAGCCTC GACCTTCTGG GGTCAAGTGA TCCTCCCAAT TCAGCCTCCA AATTTCTTTA AACAAAAAAA AATGCAAGAA 001040 001041 AGGCAAAACA AGATATTTAT CTGGGCTGAG AGGGTAAAGA GAAGCTCTAT CTTTGAGCTG AGACACAAAA TGGAAAGAAG 001120 001121 AGGCAGCAGC AGCGGCAGTA GCAGTTCTGC CTTTCCAAAC CTTCCCTATC TAAGTGCTTT CAAGATATGC TGAAAGTCAT 001200 001201 GAATTGAAGT GTGGTTCCCA CGGCTTTAGT CCTTGTATGA AGGTCCTTTT GCTAGAACTT ACTTCCTTTC CAGCCCATAT 001280 001281 GGTTGACCTG GGGGTCCAGG CAGTTCTCAA GGGAACCACA GGATTCCATG TGATCTGGGA TCCCAGTTGA TGATCCCTCT 001360 001361 TCTGGTCACA AGCTGAATTG GACCCAAATC TGCACCCTAA ACTCCCCTCT TGCCAGATCC TGCCCAGTCA GTGCCGTCCC 001440 001441 CTCAGACTGG GTGGGCAGCC TGGGCTTCCT GCTGAGACGG GACCCCCCCC TCTCTTCTTG ATCTCACTCC CAGGAAAGAC 001520 001521 ACTGAAGGAG CAGAGGTGTG GACGCCACAT ACTGGACGGG GTTTCACCAT CTGCTGGGAC GGGACACCCT CTCTTCTTGA 001600 001601 TCTCACTCCC AGAAAAGACA CTGAAGGAGC AGAGGTGTGG ACGCCTCATA CTGCTAGAGA CGGGGTTTCA CCGTGTTAGC 001680 001681 CAGGATGGTC TCAATCTCCT GAAGTCGTGA TCCACCCGCC TTGGCCTCCC AAAGTGCTGG GATTACAGGC GTGAGCCACT 001760 001761 GCACCCGGCT GAAATTGTAT ACTTTAAAGG GATGAATTTT ATGGTATGTG AATTATGTCT CATTAAAAAA AACAAACTGT 001840 001841 TAAG |
Predicted Small Protein
Name | NONHSAT053780_smProtein_1031:1192 |
Length | 54 |
Molecular weight | 6193.0647 |
Aromaticity | 0.11320754717 |
Instability index | 81.3113207547 |
Isoelectric point | 10.5188598633 |
Runs | 10 |
Runs residual | 0.0284169351127 |
Runs probability | 0.00686274509804 |
Amino acid sequence | MQERQNKIFIWAERVKRSSIFELRHKMERRGSSSGSSSSAFPNLPYLSAFKIC |
Secondary structure | LLHHHLLEEEHHHHLLLHHHHHHHHHHHHLLLLLLLLLLLLLLLLLLLLEEEL |
PRMN | - |
PiMo | - |