NONHSAT053890
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT053890 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
2616 nt |
Genomic location |
chr17+:42023509..42027711 |
Exon number |
3 |
Exons |
42023509..42024015,42024022..42025090,42026672..42027711 |
Genome context |
|
Sequence |
000001 GTTTTCAGTA ACATTCCCAC AGTGCTTGCC ACAGAGCCCT GCTTAAAGAA AGCACCAGTT CCTGGCCTGC AGACCCACTA 000080
000081 AATGAAGATG ATAGTGGTAC CTCTTCCCCT GCCCAACACC ACGCCCTCTG GCACAAGGTG GATGGCCACT GGCAGTGATG 000160 000161 GGGATGGAGT AAGTGCTATG AGACTAGGAG AGGAACACCC CAGGAACACC TGAGGTCACA GAGTGAATGA AGGCAGGTAA 000240 000241 AGGAGCAAAG GGAATGGGGG CCCCCACATA CGTGACCCCA GGGCAGCAGC TTGGCCTGCA CCGAGTCCTC CATCACACAC 000320 000321 ACTCCCCCGC CCCACCCCCG CATCCTGGCT GTCTAACCAC AATCCCTGCT GCCTTCAGTT AATCAACCAA TGAGTGGTCA 000400 000401 TTCATTGCAC ATCTGTTCTG GGCCTCATGG GGGCAGCGGG AGGTGATGAA GAAGCAAGGG TTCTACAAAG AGGTCAAAGC 000480 000481 TACGTGAGGA GCCGGGGAAT GGCTTGCTTT TTTTTTTTTT TTTTTTTAGA CGGGCTCTCA CTCTGTCACC CAGGCTGGAG 000560 000561 TGCAGTGGCA TGATCATTGC TCACTGCAGC GATGTCTCAT GGGCTCAAGG GATCCTGCCA TCTCAGCTTC CCAAGGGGCT 000640 000641 GGGACCAAAA GTGTGTGCCA CCATGGCCTG CTATTTTTTT TTTTATTTCT TGGAGAGATG GGCTCAAGCA TCTACACACC 000720 000721 TCAGCCTCCT AAAGTGCTGG GATTATAGCT GTGAGCCGTT GCACCTGGCC AGGATGGCTT TTTTTGAAAG TGAGGACACG 000800 000801 AAAGTTCAGA AAGGGGAAGA AACTGGCTGT GGTCCTGCAG CAAGCTGGCA GCCGTCCCTC ACCTAGCCCT GCGCTTCAGA 000880 000881 ACCTTACTCA CAGATCATCT TACAAATGCC TCTTTGCTAC TTTGTGAGGG AGGCAGGAAT TACTCTTCAC CCTTATCAGA 000960 000961 TGAGAAAACC AAGGCCCAGT GAGGTAGCTG AGGCTGTCTA AGGTTACATG GGAGTCAGGA AGGGTCAAGA CTAAACCCAG 001040 001041 GTCCACGTGG TTCCAGCCTG GCTTCATCCC TGTTTGCAGA CCCCCCAATC CCAACCCGCC ACTGGCCAGA GCCTGGCCCA 001120 001121 GCTCTTAGGC CAATGTCTTA TTCCAAAATT AAATGGCAGC AGCAGAGGAA GGGATAGATT GGGGGGTAGC TGCCCCCAGA 001200 001201 TGCCAGGACC TATGCCCTGG AGAAACCCTT GGGCTGGGGA TAGCTGTGAC ATGTACACAC ATACCTTGGG CCCCTTGTCT 001280 001281 CACCCACTCT GAGCCAACTC AGGACCCAGT GGGGGCTCAC TCCACTAATT TGGAGCCTGG GCTCTGCCTC CACTTCTCTC 001360 001361 TGCCCTGGGA ACTCCATCTG CCTCCAGGGC CTCCTGAAGA CACGCAGGGG AGAGTTCAGT ATTTCTCCCT TCCTGTCTCC 001440 001441 AGTGTCTGCA ACAGCAAATC CTATCATTGC CGCTCCAAAT TTTTCTCAAA GAGGAAGCCT TCTTTCTTGC TGAAATAGAA 001520 001521 ACTAAACCAA GCTACATAAT ACAGTTTGAG AACAGCCTGG CCAACGTGAT GAAACCCCAT CTGTACTAAA AATACAAAAA 001600 001601 TTAGCCGGGT GTGGTGGCGC GTGCCTGTAG TCTCAGCTAC TCCAGAGCCT GAGGCAGGAG AATCGCTTGA ACCCGCGAGG 001680 001681 CGGAGGTTGT CGTGAGCCTA GATCATGCCA CTGCACTCCA GCCTGGGCGA CAGAGCGAGA CTCCATCTCA AAAAAAAAAA 001760 001761 AAAAAATGAT GAGGTCATAC TACAGTGTGT GAACCCCTAA TCCTATAGGA CTGTTCGCCT TTGAAAAGGG GAAATTTAGA 001840 001841 CACAGAAACA GCCATGCAAA GAGGGAAGAT GATGTGAAGA GGCACAGCTC AGACACCCAT CTTCAAGGCA AGGAGAGAGG 001920 001921 CCTGGAACAG ATCAGAAGGA ATCAACCTGC CAACTCCTTC ATTTCAGACT GCTAGCCACA GGAACTGTTG TTTAAACCAC 002000 002001 CCAGTCTGTG ATTCTTTGTT ATGGCAGCCC TAGCAAACTA ACCAGCAATG CCATCTTCAT CTGATTCTCT TTAAATACTC 002080 002081 CAAGCAGGAG ACCAGTTACC ATTTAAGTCC AACTACCCCA AGAATATCAG ACTGGGGAGG CCACATGTAG GTACAATGGT 002160 002161 CAACAGCCCC GGCTGAACTC AACAGCCAGC ACTAGCATGC GAATGAGCCT TCTCAGGCAT CAGCCCAGTG GATCGTTAAC 002240 002241 CACAACCCTG CCAACCTCTG ATAGTATCCG CATGTGAGAC TCAAAGCAAG AACTGCCAGG GGGAGCACTT CCTGATCCTG 002320 002321 ACCCACAAAA TCCTGAGTGA TGTACAATGG TTGCTTGAAG CTGCCAAGTT TTAGGGTAAC TTATTATACA ACATAGTAAC 002400 002401 CAGAGTGCTT ACCTTCCCCT TCCCTCCCTT GCCACTGGCC GGAACACAGA TGAGGCCATG GTGGGCTGTC TTCAGTCCTG 002480 002481 TAAATGACAT AGATGAGGGC ATGGGGAAGC CACAAACGAG GAGCCTGGGC TCTTGGATGC CCTCATGGAG CACAACTGCC 002560 002561 AACTCCCCAC GTGCCACTCA CATTTCATGC AAGAGAAATA AATTTCCATC TTGTTT |
Predicted Small Protein
Name | NONHSAT053890_smProtein_569:865 |
Length | 99 |
Molecular weight | 10966.5407 |
Aromaticity | 0.132653061224 |
Instability index | 46.4235714286 |
Isoelectric point | 5.82305908203 |
Runs | 11 |
Runs residual | 0.0267976349418 |
Runs probability | 0.0335308570603 |
Amino acid sequence | MIIAHCSDVSWAQGILPSQLPKGLGPKVCATMACYFFFYFLERWAQASTHLSLLKCWDYS CEPLHLARMAFFESEDTKVQKGEETGCGPAASWQPSLT |
Secondary structure | LEEEEELLLLHHHLLLLLLLLLLLLLHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHLL LLHHHHHHHHHHHLLLLEELLLLLLLLLLLLLLLLLLL |
PRMN | - |
PiMo | - |