NONHSAT053925
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Contents
Annotated Information
Transcriptomic Nomeclature
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Function
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Regulation
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Expression
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Allelic Information and Variation
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Evolution
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Labs working on this lncRNA
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References
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Basic Information
Transcript ID |
NONHSAT053925 |
Source |
NONCODE4.0 |
Same with |
, |
Classification |
intergenic |
Length |
1799 nt |
Genomic location |
chr17+:42299283..42301069 |
Exon number |
3 |
Exons |
42299283..42300186,42300193..42300634,42300640..42301069 |
Genome context |
|
Sequence |
000001 AGTTGCGGGG ATTTTTCAAG AAGCAGCAGC TACCCCGGCG TCGGTCACTG GGCCGGGGTA GGGGAAAGAG CAAAATCCCA 000080
000081 GTGGGTTTGC GCGAGGGATC TTCTAGGGTC GAGGCGGGTG TGGGGGGAGT TGGAACCGGG AGACACCGCT TGGCGCATCT 000160 000161 CTCCCTCGGT CTCTACCTCC TGTCCTATGC CAGCTCCCCC TTTAATTTTT TTCCTCTCCT TTAATCTAAT TTCTTCCAAC 000240 000241 TCCACCTTTG TTGTTACCGG CGTCACACCC GGACCAGCCA ATCCCCGCCA CGCAATCAGC TTGTCAAAAA GCCTCGGCCA 000320 000321 TCCCTAGGAA AGCAGGCCGC AGGCGCTGCC CCCCGGCGGC GGCGGGCAGC CGCGAGGGGA GCCCAGCACC CGGTTCTCGC 000400 000401 TGCCCCGGGT GGCAGCGGGG CAGCCTCCGA CAAGACGTCC CTTGGTTCAC TGTCCTGCAG GCCGGGGATG AAAGGCCTGG 000480 000481 ACAGGGTCCA CCACCCACTC TCCCACTGCC ACGGCCGTGG TTGACTGTCT TTGCCTCCCC TTTTCAGAGG AAAGGTTATC 000560 000561 AGGACAGGAC GCAGGGAGCC AGAAGACCAT CTGAAGGAAG CCTGCTTCCA ACGGGCCCAG CCTCCAGCCA CCGCTCCTGG 000640 000641 GGCAGCGCCA TTGCTCCTGG CTCTCAGGCT GCCAGTCTCC CACACCGACG CTCTACTGCC CGCATCTCGG CCAGCTGGGT 000720 000721 CACCCAGCCC CTTTCGACTC TCCCCTGGCA CGCAGCCTTC TCCTTCACTC GGCCTGCCTC GCTGCTGCTG TAATTCCTCT 000800 000801 TGTCTCCTGG GAGAAATGAG ATTGCTTTCC CAGGACTTCC ACATCCCACT TCTATCAGGT TTCACCAACA GGGAGGAAGC 000880 000881 CCTGTCAAGA TCTGGTGTGT CCTGTTTTTT TTTTTTCCCA GAGGGCACTG GCATGTAGGA GAAGCGGATT TACCACTAGT 000960 000961 AGATGTTAAT GAAATTTCAG CTTCTAGGCT CCTAACTTGC AGGACCTGCC CAAGGCCCTG AACTTAATTT TGTTTTCATC 001040 001041 ATTTGGTATT TTTTTGTTAA AAGAGCCACC GACCACCTCC CCGCTACCCC AGAACTGCAC GTGTTTCTGG CCCTACAAAC 001120 001121 CCAGATCGTC CCTTGGAATA TACACAGGGC AATTTGTGTA GGATCACACT GCGCTAAAAG TGAGGCATGG TGGGCTAGGC 001200 001201 GCACTGGCTC GCACCTGTGG TCCCAGCACT TTGGGAGACC AAGACAGGAG GTCTTAAGTG ATTAAGCCCA GGAGTTCGAG 001280 001281 ATCAGCTTGG ACAACATAGC AAGATGCTGC CTCTACAAAC ACACACACCC CCTATTATAA TATGTCAAAA AAAAAAAAAA 001360 001361 GGAAAAGTGA GGCATAGAAC TGACTTTATT GTTTTGACTA GGAAAGAGCA AAGGGTTTGG AATCAAAAGT CCCAACTTCC 001440 001441 CCACCTTCTT AATAGTGTGT GAATCTGAGT GCCTTATTAA CCTTCCCTGG TCCCAGTTTC GTATCTGTAA AGTTAGAATA 001520 001521 GCAATCCTGT TTAATTTGCT TCTCTCACCA GGGATCAGAA GGCCAAATGA GATGATGTAT GTAAAATTGT AAAGTCCTCC 001600 001601 ACAGATGGCA CTTGCCACAT TACAGAGAAC TTGAGACCCC CCCCCCACCA ATAACGTTCC AAATCTTCCA CATGCAGATC 001680 001681 TGGAGTCCAG GTGTCCTGGC TCCTGGCCCT GAACTTTTTG GCTGGGCCAA GGGGCTTTTC GGTAAAGTGC TTTGGTGCTT 001760 001761 TGGAATAAAA CAGGATGAAC ATGAAAAAAA AAAAAAAAA |
Predicted Small Protein
Name | NONHSAT053925_smProtein_815:937 |
Length | 41 |
Molecular weight | 4526.135 |
Aromaticity | 0.15 |
Instability index | 59.1325 |
Isoelectric point | 5.50994873047 |
Runs | 7 |
Runs residual | 0.00302419354839 |
Runs probability | 0.0308627955687 |
Amino acid sequence | MRLLSQDFHIPLLSGFTNREEALSRSGVSCFFFFPEGTGM |
Secondary structure | LEELLLLLLLLLLLLLLLHHHHHHLLLLEEEEEELLLLLL |
PRMN | - |
PiMo | - |